Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_G05
         (908 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   304   5e-83
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    30   2.6  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  304 bits (747), Expect = 5e-83
 Identities = 151/258 (58%), Positives = 180/258 (69%)
 Frame = +1

Query: 76  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 255
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 256 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 435
           KI+ QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +K
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121

Query: 436 LCKVKRVATGPXNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESXNLCM 615
           LCKVK V T    VP L T DGRTIRYPDP +KVND+I  +I+T KI D +KFE  NL  
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181

Query: 616 ITGXRNLGRVGTIVSARDIPAPSNIVHIKXSTGTHLRHXX*TTCS*SXKXTKAYISLPXG 795
           +TG RN+GRVG I     +P  S+I+HIK S G H      +      K  KA +SLP G
Sbjct: 182 VTGGRNVGRVGIIGHRERLPGASDIIHIKDSAG-HSFATRISNVFVIGKGNKALVSLPTG 240

Query: 796 KGIXLTIXXEXDKRIPXK 849
            GI L+I  E DKR+  K
Sbjct: 241 AGIRLSIAEERDKRMAQK 258


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
 Frame = +3

Query: 504 HHPLPRPTYQSQRFH-PVRHCNYXDYGLHQV*VXELVYDHRXP*LGACGHHRVRXRHPGS 680
           HH      +  +  H P  H ++ ++G H     E  + H     G  G H     H GS
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE--HHHAPAHHGHHGEHGTHHGHHGS 554

Query: 681 FQHCAHQGXH 710
               AH G H
Sbjct: 555 HHSPAHHGHH 564


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,736,865
Number of Sequences: 27780
Number of extensions: 386903
Number of successful extensions: 879
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)