Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_F24
         (950 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    77   3e-15
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    75   1e-14
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    71   3e-13
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.18 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.42 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.55 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   0.99 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.1  
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    27   5.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   9.0  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 77.4 bits (182), Expect = 3e-15
 Identities = 35/65 (53%), Positives = 50/65 (76%)
 Frame = +1

Query: 127 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 306
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 307 NIGSG 321
           NIGSG
Sbjct: 61  NIGSG 65


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 34/64 (53%), Positives = 49/64 (76%)
 Frame = +1

Query: 127 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 306
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 307 NIGS 318
           NIGS
Sbjct: 61  NIGS 64


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 70.5 bits (165), Expect = 3e-13
 Identities = 31/64 (48%), Positives = 48/64 (75%)
 Frame = +1

Query: 127 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 306
           +S +ELA  Y+ALIL D+ + +T +K+ ++ KA  V+VEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60

Query: 307 NIGS 318
           NIGS
Sbjct: 61  NIGS 64


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 550  PTPXXPPPXPPPPXPXXXXXXVPXP 624
            P P  PP  PPPP P      VP P
Sbjct: 1722 PMPAGPPSAPPPPLPASSAPSVPNP 1746



 Score = 29.1 bits (62), Expect = 0.96
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 554  PPXPPPPXXXPPPPXXXP 607
            P  PPPP   PPPP   P
Sbjct: 1705 PTPPPPPMSVPPPPSAPP 1722



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = +1

Query: 547  SPTPXXPPPXPPPPXPXXXXXXVPXPXXPP*XXVXRAP 660
            +PTP  PP   PPP         P    PP      AP
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 550 PTPXXPPPXPPPPXPXXXXXXVPXPXXPP 636
           P P    P PPPP P       P P  PP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
 Frame = +2

Query: 554 PPXPPPPXXX----PPPPXXXPXXSPG 622
           PP PPPP       PPPP   P  S G
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 564 PPPPPXXPXPPXPXPQXPXAGXXP 635
           PPP P    PP P P    AG  P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGP 775



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +1

Query: 547 SPTPXXPPPXPPPPXPXXXXXXVPXPXXP 633
           +P    PPP PPPP         P P  P
Sbjct: 755 APIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +3

Query: 564 PPPPPXXPXP-PXPXPQXPXAGXXPLXXGSPRXP 662
           PPPPP    P P P P  P     P+  G P  P
Sbjct: 733 PPPPPAVIVPTPAPAP-IPVPPPAPIMGGPPPPP 765



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +1

Query: 550 PTPXXPPPXPPPPXPXXXXXXVPXPXXPP*XXVXRAPP 663
           PTP   P   PPP P       P P  PP       PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGG---PPPPPPPPGVAGAGPP 776



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 568 PPXPPPPXPXXXXXXVPXPXXPP 636
           PP PPPP         P P  PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 554 PPXPPPPXXXPPPPXXXPXXSPG 622
           PP PPPP    PP    P   PG
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 551 LPPXPPPPXXXPPPPXXXPXXSPGRXXP 634
           LPP  PPP   PPPP   P   P    P
Sbjct: 4   LPPGNPPP--PPPPPGFEPPSQPPPPPP 29



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
 Frame = +1

Query: 565 PP--PXPPPPXPXXXXXXVPXPXXPP 636
           PP  P PPPP P       P P  PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
 Frame = +3

Query: 555 PXXPPPPPXXP--XPPXPXPQXPXAG 626
           P  PPPPP  P   PP   P  P  G
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect(2) = 0.99
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 556 PXXPPPXPPPP 588
           P  PPP PPPP
Sbjct: 942 PAFPPPPPPPP 952



 Score = 21.8 bits (44), Expect(2) = 0.99
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 550 PTPXXPPPXP 579
           PTP  PPP P
Sbjct: 905 PTPPPPPPLP 914


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +3

Query: 564 PPPPPXXPXPPXPXPQXPXAGXXPLXXGSPRXP 662
           PP P     PP   P  P +    L  G+P  P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +2

Query: 557 PXPPPPXXXPPPPXXXPXXSPGRXXP 634
           P PP     PPPP      S GR  P
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPP 377



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +3

Query: 555 PXXPPPPPXXPXPPXPXPQXPXAGXXPL 638
           P  PP  P  P  P P P  P A    L
Sbjct: 467 PPLPPAAPAPPPAPAPAPAAPVASIAEL 494


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +1

Query: 109 RSKLKMVSKAELACVYSALILVD-DDV--AVTGEKISTILKAAAVDVEPYWPGLFAKALE 279
           R+ L+ +   E     S L+L +  DV  A++ E+IS IL  +      +W      AL 
Sbjct: 103 RNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALT 161

Query: 280 GINVRDLIT 306
           G+N++D I+
Sbjct: 162 GLNIKDAIS 170


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 564 PPPPPXXPXPPXPXPQXP 617
           PPPPP  P P    P  P
Sbjct: 5   PPPPPPAPAPAAAAPAPP 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,661
Number of Sequences: 5004
Number of extensions: 40452
Number of successful extensions: 387
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)