Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_F22
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839...    30   2.1  
03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498...    30   2.8  
12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110     29   3.7  
01_05_0344 + 21172101-21172233,21172332-21172402,21172492-211726...    29   4.9  

>02_04_0515 +
           23582105-23583519,23583613-23583741,23583835-23583970,
           23584051-23584139,23584236-23584347,23584427-23584533,
           23584630-23584723
          Length = 693

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 408 PNERRTLLRIPEECSGGCSSQRSMEHPRR 494
           P+E RT  R P E SGG  S+RS E P +
Sbjct: 76  PSEGRTEDREPGEVSGGSGSERSGERPMK 104


>03_06_0565 +
           34747278-34748066,34748170-34748406,34749777-34749869,
           34751752-34751988,34752398-34752584,34752956-34753028,
           34753145-34753289,34753670-34753779,34754127-34754258,
           34754328-34754469,34754545-34754679,34756278-34756435,
           34757327-34757401,34757505-34757643,34757838-34757952,
           34758016-34758107,34758500-34758613
          Length = 990

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = -3

Query: 266 GWCVQTLLSWCAAYHRGP*KCACRGRNYSSRIRQRMLLTYLRLAFGINIKYKKSQRKRRV 87
           GW V  +L  C AY  G          + S   Q   LT  R     N+   +++R+R  
Sbjct: 424 GWAVAQVLKSCCAYSSGVTAAILLSDLFQSWTEQSKSLTAKRKVELTNLLKTRNRRRRLP 483

Query: 86  DSVTLNFVGTK 54
           +++T++ +  K
Sbjct: 484 NTITIDSIHEK 494


>12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110
          Length = 530

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 281 RTDRSGWCVQTLLSWCAAYHRG 216
           R + + W ++ L  WCAA HRG
Sbjct: 186 RVETTRWSLEQLNRWCAALHRG 207


>01_05_0344 +
           21172101-21172233,21172332-21172402,21172492-21172653,
           21172995-21173100,21174242-21174439,21174565-21174631,
           21174868-21175051,21175145-21175324,21175408-21175587,
           21176472-21176627,21177487-21178067,21178535-21178640,
           21179152-21179331,21179620-21179892
          Length = 858

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +1

Query: 298 RHETHER*AQQEDFKHQTLDGLLINRQLWLAE-GLLSCQTKGGRYCGYPRSVRVDARLRD 474
           R ET  + AQ   F  +    ++I +Q       L+ C   G RY GY    R +A    
Sbjct: 203 RKETMGKCAQLAQFDEELYKAIIIVKQSGNDTFSLIKCNFSGMRYAGYSTCFRKEAGSHG 262

Query: 475 RWNIQGVFCSHK 510
           R +  G+F  H+
Sbjct: 263 R-DTAGIFRVHQ 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,855,183
Number of Sequences: 37544
Number of extensions: 400039
Number of successful extensions: 950
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)