Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_F20
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   4.7  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    27   4.7  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    26   6.2  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   6.2  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   6.2  
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    26   8.2  

>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -2

Query: 259 KTMRARCAATERMSGWFSKTAHILYSK 179
           KTM AR  ATE  S +FS +A  L SK
Sbjct: 505 KTMLARAVATESRSVFFSISASSLTSK 531


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 259 KTMRARCAATERMSGWFSKTAHILYSKH 176
           KTM AR  ATE  + +FS +A  L SK+
Sbjct: 425 KTMLARAVATEAKATFFSISASSLTSKY 452


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 766 QVNNXNCXHFMFQGQGEVLGKVFPALMNR 852
           Q  N    H +  GQGE L +V  AL+NR
Sbjct: 557 QWGNWVVQHMVENGQGEDLKRVIDALLNR 585


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 465  LWCKVXXNLRVFPFLEVAQSTVNTGVNSDLVHSTRAGVH 581
            LW K   N  V   L V  STVN  +  D++    A +H
Sbjct: 1711 LWFKFGNNSNVINTLNVGISTVNIDIWLDVIPQLIARIH 1749


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 529 LTQGSIRTSFTVHALASTSRHSLVVTTLNSAXPQPKNAANNS 654
           L   ++ T+    A   TS HS+  T + S  P P  + N++
Sbjct: 39  LPSANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNST 80


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -1

Query: 563 TVNEVRIDPCVNSRLCHLKKGKNAKVXXDFTPQFFTTKLKTGLFGLKNGAEIPF 402
           T   +   PC+++ L  +     A+   +FT    TT+   G  GL+ GA I F
Sbjct: 421 TYKSILSKPCISTGLGLVYATPAARFELNFTLPIATTEKDIGRKGLQFGAGIDF 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,771
Number of Sequences: 5004
Number of extensions: 50891
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)