Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_F19
         (867 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   118   7e-29
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.52 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  118 bits (284), Expect = 7e-29
 Identities = 68/140 (48%), Positives = 84/140 (60%), Gaps = 3/140 (2%)
 Frame = +3

Query: 114 GKRAPIRKKRKYELGRPAANTRLGPQRIHSASFTWW--KY*VPCAASGHR*LLLGDRNVQ 287
           GKR PIRKKRK+ELGRPAANT+LGPQRIH+        KY      +G+     G     
Sbjct: 16  GKRKPIRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYRALRLDTGN--FSWGSECT- 72

Query: 288 LAKPVSLMLCIMHLTMNWCVQ-RPLFKNAIVVXDATPFXQWYESHYTLPLGRXKGAKLTE 464
             +   ++  + + + N  V+ + L KNAIV  DATPF QWYE HY LPLGR +GAKLTE
Sbjct: 73  -TRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGRKRGAKLTE 131

Query: 465 AEEAIINXKXXXXTAXKYLA 524
           AEE ++N K       KY A
Sbjct: 132 AEEEVLNKKRSKKAEAKYKA 151



 Score = 86.2 bits (204), Expect = 3e-19
 Identities = 64/189 (33%), Positives = 84/189 (44%), Gaps = 4/189 (2%)
 Frame = +2

Query: 68  MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRFVHVVEILS---TV 238
           MGISRDHWHKRRATG +     ++ +  +     +  A +   P R +H V         
Sbjct: 1   MGISRDHWHKRRATGGKRKPIRKKRKFELG----RPAANTKLGPQR-IHTVRTRGGNKKY 55

Query: 239 RCVWTPVTSLG-GSECSTRKTRIIDVVYNASNNELVRTKTLVQECNCCXRCNSIXXXXXX 415
           R +     +   GSEC+TRKTRIIDVVYNASNNELVRTKTLV+                 
Sbjct: 56  RALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEG 115

Query: 416 XXXXXSWEEXGSETD*G*GSYYQQXXXSXXSXKILGXANXLLXXRVLXXXXSTRGRLXXC 595
                   + G++          +        K             L    +T GR+  C
Sbjct: 116 HYVLPLGRKRGAKLTEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEEQFAT-GRVLAC 174

Query: 596 VASRPGQCG 622
           ++SRPGQCG
Sbjct: 175 ISSRPGQCG 183



 Score = 49.6 bits (113), Expect = 4e-08
 Identities = 20/23 (86%), Positives = 22/23 (95%)
 Frame = +1

Query: 205 LRSRGGNTKYRALRLDTGNFSWG 273
           +R+RGGN KYRALRLDTGNFSWG
Sbjct: 46  VRTRGGNKKYRALRLDTGNFSWG 68


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 744 PPPPXPPPPXXVPXGP 791
           PP P PPPP     GP
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 738 PXPPPPXPPPPXXVP 782
           P P PP PPP    P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 720 LXXNXXPXPPPPXPPPP 770
           L  +  P  P P PPPP
Sbjct: 332 LGDSDTPPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 744  PPPPXPPP 767
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 747  PPPXPPPP 770
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,596
Number of Sequences: 438
Number of extensions: 5967
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)