Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_F13
         (1025 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.21 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.21
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +2

Query: 395 GPXXPPXPXXPXPPRXAPPPPXXPXXEGGXPXXAPP 502
           GP   P      P R +PP P      GG P  APP
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGG-PPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 431 PPRXAPPPP 457
           PP+ APPPP
Sbjct: 338 PPKPAPPPP 346



 Score = 23.0 bits (47), Expect = 4.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 439 PXXAPPPXPPXRGG 480
           P  APPP PP   G
Sbjct: 339 PKPAPPPPPPSSSG 352



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 988  PPXPXPXXPPP 1020
            PP P P  PPP
Sbjct: 338  PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.143    0.496 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,876
Number of Sequences: 438
Number of extensions: 3220
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34225737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)