Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_F08
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    27   4.7  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    26   6.2  

>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 342 YGIRFKYHFPIALAEPKDLDRRARFDDAVTNVPAHFFNFLEDLPP 208
           + +  K   PIA+ + K + R    + AV  V    FN  ED  P
Sbjct: 254 WSVAIKNGMPIAIEKAKAVSRVGNEEGAVGEVLERIFNIPEDYTP 298


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 162 EDEG*DLCEVHCKFM*IQPRTLRHKRRCTDHLMCTIXNVKS*GIPYSESVI 10
           E +G +   VH + + I+  TL  K   T+ L+C    +K+   PY   V+
Sbjct: 656 EQDGWEFIPVHGQQVGIRTSTLEDKCTATEMLVCYAAELKADFDPYVNEVL 706


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,465
Number of Sequences: 5004
Number of extensions: 34003
Number of successful extensions: 67
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)