Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_F07
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0519 - 34481751-34482722 35 0.095
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 31 1.2
01_05_0564 + 23312419-23312987,23314652-23314751,23314832-233150... 30 2.0
12_02_1007 - 25248653-25249078,25249956-25250021,25250108-252502... 29 4.7
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497... 29 4.7
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 6.2
09_06_0172 + 21329904-21331512,21331595-21331740,21332333-213325... 29 6.2
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 28 8.3
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 28 8.3
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 28 8.3
01_07_0082 - 40965947-40967023 28 8.3
>03_06_0519 - 34481751-34482722
Length = 323
Score = 34.7 bits (76), Expect = 0.095
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 157 KQGCSAPPVVATLTSSIPNRSHRGPGAVPFHQAQRALSATDKEMSRK 297
K+G APP ++ T + RS R GA P H A+ S+T+ S +
Sbjct: 26 KRGAEAPPATSSSTPTTARRSKRLAGAPPDHPAEAGPSSTNARRSSR 72
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 216 EPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATN 326
+ P+ G A P A STF H Q P ATN +++ N
Sbjct: 586 QAPQAG--APYPQAASTFPHSQASHPAATNPSTIPQN 620
>01_05_0564 +
23312419-23312987,23314652-23314751,23314832-23315055,
23315212-23316041,23316161-23316275,23316786-23316905,
23317410-23317450,23317546-23317595,23317684-23317719,
23317836-23317856
Length = 701
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 216 EPPRTGRRAVPPS--ATSTFSHGQGDEPKATNGTSVATNGQST 338
+ PR+G ++ S A ST +HGQ + G + +N QST
Sbjct: 410 QSPRSGGTSLNSSGFAASTVNHGQSSVVRTQGGNGIPSNNQST 452
>12_02_1007 -
25248653-25249078,25249956-25250021,25250108-25250260,
25250961-25251336,25252001-25252143
Length = 387
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 117 HHSTLASMTELVYQAGXLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATST 266
++++ + EL++Q G GGG + FD P P R + PP A T
Sbjct: 46 YYTSSEDLFELMWQGG-----GGGGASSFDQPPPPVSYHRLSPPPPAMGT 90
>09_04_0695 -
19547101-19548010,19548089-19548587,19549461-19549728,
19551025-19551687,19551849-19552060,19552203-19552593,
19552659-19553107,19553454-19553790
Length = 1242
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 156 QAGXLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATS 263
+ G L PP GH+ D PP A P+ATS
Sbjct: 4 EPGELSPPATGHSGHGDLNSPPPAAPAGASSPAATS 39
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +3
Query: 174 PPGGGHTNIFDSEPEPPRTGRRAV-PPSATSTFSHGQGDEPKATNGTSVATNGQSTP 341
PP G N F + P PP R + P+ +T S G P + TNG P
Sbjct: 653 PPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANRTNGPGVP 709
>09_06_0172 +
21329904-21331512,21331595-21331740,21332333-21332556,
21333689-21334448
Length = 912
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +3
Query: 213 PEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNG 329
P PP A PP S + +G G P G +VA G
Sbjct: 167 PPPPYGSGYAPPPPYGSGYGYGYGPAPDYGGGMAVANGG 205
>06_03_1490 +
30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 157 KQGCSAPPVVATLTSSIPNRSHRGPGAVPFH 249
KQ S+PPVV+ +S+P+ + GP A P H
Sbjct: 290 KQDSSSPPVVS---NSLPSANALGPSAGPHH 317
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 148 SSIKQGCSAPPVVATLTSSIP-NRSH 222
SSIK GCS PP + ++S P N SH
Sbjct: 366 SSIKGGCSYPPCICKSSTSKPENLSH 391
>04_03_1049 +
22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 209 RTGATEDRAPCRSTKRN---EHFQPRTRR*AESDQRHFSSDQRSVHS*GEPGATDPAGG 376
RTG E R T+R E +P R A + +R +++QR + + G +DPAGG
Sbjct: 575 RTGGVERRRREPVTRRRGGKERRRPSWRALAANRRRGEAANQRRGEAATQRGGSDPAGG 633
>01_07_0082 - 40965947-40967023
Length = 358
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 162 GXLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNG 308
G PP G+ + ++P PP+ G PP + + G G P+A G
Sbjct: 253 GTAPPPQYGYG--YPAQPPPPQAGYGYPPPPPQAGYGGGYGYPPQAGYG 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,629,491
Number of Sequences: 37544
Number of extensions: 407450
Number of successful extensions: 1192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -