Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_F06
         (911 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +2

Query: 758 PXPXPXPXXPPPXXPXXXPXXPXXXXPPPXXXPXXXP 868
           P P P P   P       P  P    PPP   P   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNP-SQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +3

Query: 543 PPXPXXXPPPPXPXXPP 593
           PP P   PPP  P   P
Sbjct: 39  PPNPSQGPPPGGPPGAP 55



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +1

Query: 640 GGPXPPSXGGXXXXXPPXKXXXXXPPPP 723
           GG  PPS G      P        PP P
Sbjct: 406 GGQLPPSAGAPMPPIPNMSNMSGMPPLP 433



 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = +2

Query: 539 PXPPXXXXPPPPXPPXPPXXXPXXXP 616
           P  P    PP P    PP   P   P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 543 PPXPXXXPPPPXPXXP 590
           PP P   PPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 544 PPXXXXPPPPPXPXXP 591
           PP    PPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 54   SAHQVISTAPLVS*RPPLNLHKLTMNFAKIL 146
            SA  ++ T P     PP+NL    ++ ++IL
Sbjct: 994  SAELIVRTEPQRPAGPPINLEARALSSSEIL 1024


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 54   SAHQVISTAPLVS*RPPLNLHKLTMNFAKIL 146
            SA  ++ T P     PP+NL    ++ ++IL
Sbjct: 990  SAELIVRTEPQRPAGPPINLEARALSSSEIL 1020


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,678
Number of Sequences: 438
Number of extensions: 11146
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)