Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_F04
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    51   3e-07
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    47   4e-06
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    43   5e-05
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    42   2e-04
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    32   0.095
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    27   3.6  
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac...    26   8.3  

>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 43/139 (30%), Positives = 68/139 (48%)
 Frame = +1

Query: 322 EEVLKYFGTDPDKGLSPDQIKRNQEKYGPNELPTEEGKSIWQLVLEQFDDLLVKXXXXXX 501
           EE+L+   TDP  GL+  +++  ++KYG N++  E+  +I     ++F    V       
Sbjct: 163 EELLE---TDPKYGLTESEVEERKKKYGLNQMKEEKTNNI-----KKFLSFFV------G 208

Query: 502 XXSFVLALFEEHEDAFSAFVEPFVILLILIANAVVGVWQERNAESAIEALKEYEPEMGKV 681
              FV+ L          +V+  VI  +L+ NA VG  QE  A S ++ LK+       V
Sbjct: 209 PIQFVMELAAALAAGLRDWVDFGVICALLLLNATVGFVQEYQAGSIVDELKKTMALKASV 268

Query: 682 IRGDXSXVQKIRAKEIVPG 738
           +R     V++I A EIVPG
Sbjct: 269 LR--DGRVKEIEASEIVPG 285



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +3

Query: 777 ADIRLIKIYSTTIRIDQSILTGESVSVIKH 866
           AD RLI      +++DQS +TGES++V KH
Sbjct: 298 ADGRLIT-KDCFLQVDQSAITGESLAVDKH 326


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 37/140 (26%), Positives = 62/140 (44%)
 Frame = +1

Query: 319 VEEVLKYFGTDPDKGLSPDQIKRNQEKYGPNELPTEEGKSIWQLVLEQFDDLLVKXXXXX 498
           +++V   F T    GL+ ++ +    +YG N L  + G S W+++L Q  + +       
Sbjct: 15  IKDVESEFLTSIPNGLTHEEAQNRLSEYGENRLEADSGVSAWKVLLRQVLNAM------- 67

Query: 499 XXXSFVLALFEEHEDAFSAFVEPFVILLILIANAVVGVWQERNAESAIEALKEYEPEMGK 678
                VL L        + ++E  VI  I++ N  VG  QE  AE  +++L+     M  
Sbjct: 68  ---CVVLILAAALSFGTTDWIEGGVISAIIVLNITVGFIQEYKAEKTMDSLRTLASPMAH 124

Query: 679 VIRGDXSXVQKIRAKEIVPG 738
           V R   S    I +  +VPG
Sbjct: 125 VTRS--SKTDAIDSHLLVPG 142



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 777 ADIRLIKIYSTTIRIDQSILTGESVSVIK 863
           AD+RL++  +     D+++LTGES+ VIK
Sbjct: 155 ADLRLVE--TVNFETDEALLTGESLPVIK 181


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 38/139 (27%), Positives = 64/139 (46%)
 Frame = +1

Query: 322 EEVLKYFGTDPDKGLSPDQIKRNQEKYGPNELPTEEGKSIWQLVLEQFDDLLVKXXXXXX 501
           EE+L+   TD + GL+  +++  ++KYG N++  E      + ++               
Sbjct: 75  EELLQ---TDMNTGLTMSEVEERRKKYGLNQMKEELENPFLKFIM-----------FFVG 120

Query: 502 XXSFVLALFEEHEDAFSAFVEPFVILLILIANAVVGVWQERNAESAIEALKEYEPEMGKV 681
              FV+ +          +V+  VI  +L+ NAVVG  QE  A S ++ LK+       V
Sbjct: 121 PIQFVMEMAAALAAGLRDWVDFGVICALLMLNAVVGFVQEYQAGSIVDELKKSLALKAVV 180

Query: 682 IRGDXSXVQKIRAKEIVPG 738
           IR     V ++ A E+VPG
Sbjct: 181 IR--EGQVHELEANEVVPG 197



 Score = 29.5 bits (63), Expect = 0.67
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +3

Query: 738 GTLLKCPLVTRSLADIRLIKIYSTTIRIDQSILTGESVSVIKH 866
           G +LK    T   AD R++      +++DQS +TGES++V KH
Sbjct: 197 GDILKLDEGTIICADGRVVTP-DVHLQVDQSAITGESLAVDKH 238


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 2/143 (1%)
 Frame = +1

Query: 316 SVEEVLKYFGTDPDKGLSP-DQIKRNQEKYGPNELPTEEGKSIWQLVLEQF-DDLLVKXX 489
           SVE+      TD   GLS   +I R  + +G N+L  E+ +++    L+QF  D L+   
Sbjct: 9   SVEQTCADLETDMYNGLSSLQEITRRNKVHGDNDLKVEDEENMVVQFLKQFVKDPLILLL 68

Query: 490 XXXXXXSFVLALFEEHEDAFSAFVEPFVILLILIANAVVGVWQERNAESAIEALKEYEPE 669
                 S  L      +DA S       I L ++    VG  QE  +E +++AL    P 
Sbjct: 69  FASSAISVTLG---NIDDAIS-------IALAIVIVVTVGFVQEYRSEQSLKALNNLVPH 118

Query: 670 MGKVIRGDXSXVQKIRAKEIVPG 738
              VIR      + I A ++VPG
Sbjct: 119 YCNVIRS--GKTEHIVASKLVPG 139



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 716 VPRKLFPGDVVEVSVGDKIP 775
           V  KL PGD+V + +GD++P
Sbjct: 132 VASKLVPGDLVILQIGDRVP 151



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +3

Query: 738 GTLLKCPLVTRSLADIRLIKIYSTTIRIDQSILTGESVSVIKHTDPI 878
           G L+   +  R  AD+R+++  +T + ID+S LTGE+    K ++ I
Sbjct: 139 GDLVILQIGDRVPADLRIVE--ATELEIDESNLTGENSPRKKSSEAI 183


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 32.3 bits (70), Expect = 0.095
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = -2

Query: 692 SPLMTLPISGSYSFKASMADSAFLSCHTPTTALAIRISKITK-GSTKAENASSCSSNKAN 516
           S + + P+S + S  A+ A S  LS    TTA +   + ++   ST A +ASS      N
Sbjct: 418 SSVSSTPLSSANSTTATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVN 477

Query: 515 TNEIIAANSKILTKRSS 465
           +    +A+S  LT  +S
Sbjct: 478 STTATSASSTPLTSVNS 494


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +1

Query: 415 LPTEEGKSIWQLVLEQFDD 471
           +PT +GK+I+++ LE FDD
Sbjct: 110 VPTIDGKNIFEIDLESFDD 128


>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
           complex subunit Spp27|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 233

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 352 PDKGLSPDQIKRNQEKYGPNELPTEEGKSI 441
           PD  L   Q K N+E   PN+LP +E K +
Sbjct: 195 PDDQLPKPQPK-NEEPAAPNDLPKQEEKEL 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,260,457
Number of Sequences: 5004
Number of extensions: 62571
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)