Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_E16
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    28   1.6  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    27   2.8  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   8.5  

>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = -1

Query: 403 PYSLFYYKTVASRYPPAQSSASSNKKLAFFSI-ISSLHFLHAATLLQPLVEYSASQELHW 227
           P SLF      +  P ++SS+  +KK +  S  + S   L   T   PL+   + +  HW
Sbjct: 42  PVSLFCSSPYPNLPPHSRSSSLESKKPSVASQDVKSDGTLPIGTNNNPLIPSHSQESSHW 101

Query: 226 SMKFTKVTSAI 194
           +++   + SA+
Sbjct: 102 TIRHESMPSAL 112


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 193 LKIQRG*KTIENPQ*TN*ASNHADHFQF*KNS*IIHLKN 77
           L+  +G   IENP   N + NH+D+  F + S  +H +N
Sbjct: 30  LRDSQGQLGIENPPKCNNSGNHSDNLGFIEQSETVHPEN 68


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = -3

Query: 308 YQQSSFFACSYPVTTISRIFCLSGTALVHEVYQSDFSYSQNSAGVKNYRKSTINQLSFEP 129
           Y ++SF A +Y  + +S+    S       +   DF+Y+ + + V N   +  ++L   P
Sbjct: 461 YLKTSFSATTYLRSRLSQFASQSPLFREQFLLNFDFTYNLSESEVYNTVFNLCDELYTTP 520

Query: 128 C-RSLSILK 105
           C +++S+L+
Sbjct: 521 CKKNMSVLE 529


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,084
Number of Sequences: 5004
Number of extensions: 44538
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)