Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_E13
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   117   2e-27
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   2.7  
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po...    26   6.2  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  117 bits (282), Expect = 2e-27
 Identities = 54/87 (62%), Positives = 65/87 (74%)
 Frame = +2

Query: 293 KHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVXDLGNIEAIEXSGVTKVSIQ 472
           K GFH+H+FGDNTNGCTSAG HFNPE + HG  ++AVRHV DLGN+E+ +  G  K +  
Sbjct: 43  KRGFHIHQFGDNTNGCTSAGPHFNPEGKTHGDRTAAVRHVGDLGNLES-DAQGNIKTTFS 101

Query: 473 DSQISLHGPNSIIGRTLVVHADPA*LG 553
           DS ISL G NSIIGRT+V+HA    LG
Sbjct: 102 DSVISLFGANSIIGRTIVIHAGEDDLG 128



 Score = 32.3 bits (70), Expect = 0.095
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = +3

Query: 546 DLGLGGHELSKTXGNAXGRIACGVXGLA 629
           DLG G  E S   GNA  R ACGV G+A
Sbjct: 126 DLGKGTSEESLKTGNAGARNACGVIGIA 153



 Score = 31.1 bits (67), Expect = 0.22
 Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +1

Query: 181 KAVCVLRGD--VSGTVFFDQXDEKSPVVV 261
           +AV VLRGD  VSG V F+Q D+ S V V
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSV 31


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 354  LISTLKNKIMVVPVLLYAMSATSVTLRQLXTLES-LKYQSKILRSLFM 494
            L++T  +  + +PVLLY +   ++ +  L + ES  + + KIL +L M
Sbjct: 1130 LLNTASHTAVKLPVLLYILDTLNLVITHLQSEESESQLREKILANLVM 1177


>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 246 VTCCCFWRGPXP*LRVNTVSMCTNLVT 326
           + C CF +GP     +N+V++C  +++
Sbjct: 79  IDCICFTKGPGIGAPLNSVALCARMLS 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,285
Number of Sequences: 5004
Number of extensions: 47721
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)