Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_E13
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 117 1e-26
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 115 4e-26
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 113 2e-25
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 111 7e-25
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 44 1e-04
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 37 0.019
02_05_0076 + 25637752-25639062,25639221-25639297,25640962-256410... 29 3.7
07_03_0760 + 21306131-21307034,21307752-21307889,21308417-213085... 29 4.9
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 117 bits (282), Expect = 1e-26
Identities = 55/95 (57%), Positives = 62/95 (65%)
Frame = +2
Query: 269 RSXALTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVXDLGNIEAIEXS 448
R L G HGFH+H FGD TNGC S G HFNP + HG PS RHV DLGNI A
Sbjct: 43 RVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDERHVGDLGNIVA-NKD 101
Query: 449 GVTKVSIQDSQISLHGPNSIIGRTLVVHADPA*LG 553
GV + I+D QISL GP+SI+GR +VVHAD LG
Sbjct: 102 GVADIFIKDLQISLSGPHSILGRAVVVHADSDDLG 136
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 115 bits (277), Expect = 4e-26
Identities = 52/91 (57%), Positives = 60/91 (65%)
Frame = +2
Query: 281 LTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVXDLGNIEAIEXSGVTK 460
L G HGFH+H GD TNGC S G H+NP ++HG P RH DLGN+ A E GV
Sbjct: 155 LKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGE-DGVAN 213
Query: 461 VSIQDSQISLHGPNSIIGRTLVVHADPA*LG 553
+ + DSQI L GPNSIIGR +VVHADP LG
Sbjct: 214 IHVVDSQIPLTGPNSIIGRAVVVHADPDDLG 244
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = +3
Query: 546 DLGLGGHELSKTXGNAXGRIACGVXGL 626
DLG GGHELSKT GNA GR+ACG+ GL
Sbjct: 242 DLGKGGHELSKTTGNAGGRVACGIIGL 268
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 113 bits (271), Expect = 2e-25
Identities = 51/88 (57%), Positives = 56/88 (63%)
Frame = +2
Query: 269 RSXALTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVXDLGNIEAIEXS 448
R LT G HGFH+HEFGD TNGC S G HFNP HG P VRH DLGNI A
Sbjct: 83 RVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVA-NAE 141
Query: 449 GVTKVSIQDSQISLHGPNSIIGRTLVVH 532
GV + +I D QI L GPNS++GR VVH
Sbjct: 142 GVAEATIVDKQIPLSGPNSVVGRAFVVH 169
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = +3
Query: 546 DLGLGGHELSKTXGNAXGRIACGVXGLAXI 635
DLG GGHELS + GNA GR+ACGV GL +
Sbjct: 174 DLGKGGHELSLSTGNAGGRLACGVVGLTPL 203
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 111 bits (267), Expect = 7e-25
Identities = 53/91 (58%), Positives = 59/91 (64%)
Frame = +2
Query: 281 LTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVXDLGNIEAIEXSGVTK 460
L G HGFHVH GD TNGC S G HFNP ++HG P RH DLGNI A GV
Sbjct: 37 LKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITA-GADGVAN 95
Query: 461 VSIQDSQISLHGPNSIIGRTLVVHADPA*LG 553
V++ DSQI L G +SIIGR +VVHADP LG
Sbjct: 96 VNVSDSQIPLTGAHSIIGRAVVVHADPDDLG 126
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = +3
Query: 546 DLGLGGHELSKTXGNAXGRIACGVXGL 626
DLG GGHELSKT GNA GR+ACG+ GL
Sbjct: 124 DLGKGGHELSKTTGNAGGRVACGIIGL 150
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 44.4 bits (100), Expect = 1e-04
Identities = 28/85 (32%), Positives = 44/85 (51%)
Frame = +2
Query: 281 LTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVXDLGNIEAIEXSGVTK 460
L+ GKHG+ ++EFGD T G S G +NP P + DLG +EA E G +
Sbjct: 199 LSPGKHGWSINEFGDLTRGAESTGKVYNPSDYRSNKP------LGDLGTLEAGE-KGEAQ 251
Query: 461 VSIQDSQISLHGPNSIIGRTLVVHA 535
S ++ + +IGR++ ++A
Sbjct: 252 FSASKEKLKV---VDLIGRSIALYA 273
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 37.1 bits (82), Expect = 0.019
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 218 LFSSISXMKSHLLLFLERSXALTKGKHGFHVHEFGDNTNGCTSAG 352
+ ++ + S L+ E L HGFHVH G TNGC G
Sbjct: 25 MLKAVDVLASSLITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>02_05_0076 +
25637752-25639062,25639221-25639297,25640962-25641095,
25641178-25641242,25641431-25641482,25641912-25641994,
25642128-25642221,25642332-25642861
Length = 781
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 627 PSQXLHKQYGXQHYQXSYLAHGHRVPSHAGSAWTTKVRP 511
P + +QYG + + S L + +H+GS W+ K P
Sbjct: 294 PDRVKVRQYGKSYKELSGLFMNQDIKAHSGSIWSIKFSP 332
>07_03_0760 +
21306131-21307034,21307752-21307889,21308417-21308547,
21311530-21311740,21311870-21312107,21312186-21312336,
21312452-21312814
Length = 711
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 246 VTCCCFWRGPXP*LRVNTVSMCTNLVTTQMVAHQLELISTLK 371
+TC CFWR P + + V TN Q + L +STL+
Sbjct: 328 LTCFCFWRRRTPARKASPVPYSTNPDDIQSIDSLLLDLSTLR 369
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,453,383
Number of Sequences: 37544
Number of extensions: 314348
Number of successful extensions: 640
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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