Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_E13
(887 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 122 3e-28
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 122 3e-28
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 122 3e-28
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 122 3e-28
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 118 6e-27
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 110 1e-24
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 110 1e-24
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 110 1e-24
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 34 0.16
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 34 0.16
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 122 bits (295), Expect = 3e-28
Identities = 52/91 (57%), Positives = 69/91 (75%)
Frame = +2
Query: 281 LTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVXDLGNIEAIEXSGVTK 460
LT G HGFHVH++GD+TNGC SAG HFNP + HGGP S +RHV DLGN+EA GV K
Sbjct: 38 LTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEA-GADGVAK 96
Query: 461 VSIQDSQISLHGPNSIIGRTLVVHADPA*LG 553
+ + D+ ++L+GPN+++GR++VVHA LG
Sbjct: 97 IKLTDTLVTLYGPNTVVGRSMVVHAGQDDLG 127
Score = 33.1 bits (72), Expect = 0.27
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 172 MPAKAVCVLRGD-VSGTVFFDQXDEKSPVVVSGEVXRLD*G 291
M +AV VLRG+ V+GT++ Q E V+ GE+ L G
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPG 41
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 122 bits (295), Expect = 3e-28
Identities = 52/91 (57%), Positives = 69/91 (75%)
Frame = +2
Query: 281 LTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVXDLGNIEAIEXSGVTK 460
LT G HGFHVH++GD+TNGC SAG HFNP + HGGP S +RHV DLGN+EA GV K
Sbjct: 38 LTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEA-GADGVAK 96
Query: 461 VSIQDSQISLHGPNSIIGRTLVVHADPA*LG 553
+ + D+ ++L+GPN+++GR++VVHA LG
Sbjct: 97 IKLTDTLVTLYGPNTVVGRSMVVHAGQDDLG 127
Score = 33.1 bits (72), Expect = 0.27
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 172 MPAKAVCVLRGD-VSGTVFFDQXDEKSPVVVSGEVXRLD*G 291
M +AV VLRG+ V+GT++ Q E V+ GE+ L G
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPG 41
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 122 bits (295), Expect = 3e-28
Identities = 52/91 (57%), Positives = 69/91 (75%)
Frame = +2
Query: 281 LTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVXDLGNIEAIEXSGVTK 460
LT G HGFHVH++GD+TNGC SAG HFNP + HGGP S +RHV DLGN+EA GV K
Sbjct: 38 LTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEA-GADGVAK 96
Query: 461 VSIQDSQISLHGPNSIIGRTLVVHADPA*LG 553
+ + D+ ++L+GPN+++GR++VVHA LG
Sbjct: 97 IKLTDTLVTLYGPNTVVGRSMVVHAGQDDLG 127
Score = 33.1 bits (72), Expect = 0.27
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 172 MPAKAVCVLRGD-VSGTVFFDQXDEKSPVVVSGEVXRLD*G 291
M +AV VLRG+ V+GT++ Q E V+ GE+ L G
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPG 41
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 122 bits (295), Expect = 3e-28
Identities = 52/91 (57%), Positives = 69/91 (75%)
Frame = +2
Query: 281 LTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVXDLGNIEAIEXSGVTK 460
LT G HGFHVH++GD+TNGC SAG HFNP + HGGP S +RHV DLGN+EA GV K
Sbjct: 60 LTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEA-GADGVAK 118
Query: 461 VSIQDSQISLHGPNSIIGRTLVVHADPA*LG 553
+ + D+ ++L+GPN+++GR++VVHA LG
Sbjct: 119 IKLTDTLVTLYGPNTVVGRSMVVHAGQDDLG 149
Score = 33.1 bits (72), Expect = 0.27
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 172 MPAKAVCVLRGD-VSGTVFFDQXDEKSPVVVSGEVXRLD*G 291
M +AV VLRG+ V+GT++ Q E V+ GE+ L G
Sbjct: 23 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPG 63
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 118 bits (284), Expect = 6e-27
Identities = 52/91 (57%), Positives = 66/91 (72%)
Frame = +2
Query: 281 LTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVXDLGNIEAIEXSGVTK 460
L+ G HGFH+H++GD+T+GCTSAG HFNP K +HGG S VRHV DLGN+EA GV K
Sbjct: 58 LSPGLHGFHIHQYGDSTDGCTSAGPHFNPCKMNHGGRDSVVRHVGDLGNVEA-GADGVAK 116
Query: 461 VSIQDSQISLHGPNSIIGRTLVVHADPA*LG 553
+ D +SL G N++IGR++VVH D LG
Sbjct: 117 IKFSDKVVSLFGANTVIGRSMVVHVDRDDLG 147
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 110 bits (264), Expect = 1e-24
Identities = 57/114 (50%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Frame = +2
Query: 215 ELFSSISXMKSHLLLFLERSXA-LTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGP 391
EL +I +S L L S + L GKHGFH+HE GD NGC SAG H+NP K HG P
Sbjct: 39 ELIGTIDFDQSGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAP 98
Query: 392 SSAVRHVXDLGNIEAIEXSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPA*LG 553
+ RH+ DLGNIE+ SG T +S+ DS SL G SIIGR++V+H LG
Sbjct: 99 DDSNRHIGDLGNIES-PASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLG 151
Score = 34.7 bits (76), Expect = 0.089
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +3
Query: 546 DLGLGGHELSKTXGNAXGRIACGVXG 623
DLG G + SKT GNA R+ACG G
Sbjct: 149 DLGRGTSDQSKTTGNAGSRLACGTIG 174
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 110 bits (264), Expect = 1e-24
Identities = 57/114 (50%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Frame = +2
Query: 215 ELFSSISXMKSHLLLFLERSXA-LTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGP 391
EL +I +S L L S + L GKHGFH+HE GD NGC SAG H+NP K HG P
Sbjct: 39 ELIGTIDFDQSGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAP 98
Query: 392 SSAVRHVXDLGNIEAIEXSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPA*LG 553
+ RH+ DLGNIE+ SG T +S+ DS SL G SIIGR++V+H LG
Sbjct: 99 DDSNRHIGDLGNIES-PASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLG 151
Score = 35.5 bits (78), Expect = 0.051
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +3
Query: 546 DLGLGGHELSKTXGNAXGRIACGVXGL 626
DLG G + SKT GNA R+ACG G+
Sbjct: 149 DLGRGTSDQSKTTGNAGSRLACGTIGI 175
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 110 bits (264), Expect = 1e-24
Identities = 57/114 (50%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Frame = +2
Query: 215 ELFSSISXMKSHLLLFLERSXA-LTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGP 391
EL +I +S L L S + L GKHGFH+HE GD NGC SAG H+NP K HG P
Sbjct: 39 ELIGTIDFDQSGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAP 98
Query: 392 SSAVRHVXDLGNIEAIEXSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPA*LG 553
+ RH+ DLGNIE+ SG T +S+ DS SL G SIIGR++V+H LG
Sbjct: 99 DDSNRHIGDLGNIES-PASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLG 151
Score = 34.7 bits (76), Expect = 0.089
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +3
Query: 546 DLGLGGHELSKTXGNAXGRIACGVXG 623
DLG G + SKT GNA R+ACG G
Sbjct: 149 DLGRGTSDQSKTTGNAGSRLACGTIG 174
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
T01D3.3b protein.
Length = 1011
Score = 33.9 bits (74), Expect = 0.16
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 281 LTKGKHGFHVHEFGDNTNGCTSAGAHFN 364
L G+H +H+FGD++ GC+ GA F+
Sbjct: 918 LPVGRHAVVLHQFGDSSEGCSRVGAPFS 945
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.16
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 281 LTKGKHGFHVHEFGDNTNGCTSAGAHFN 364
L G+H +H+FGD++ GC+ GA F+
Sbjct: 709 LPVGRHAVVLHQFGDSSEGCSRVGAPFS 736
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,168,081
Number of Sequences: 27780
Number of extensions: 275461
Number of successful extensions: 577
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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