Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_E12
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.30 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    28   1.6  
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc...    27   3.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = +1

Query: 778 NPPPPPXKXRXPFWAPLPLSPXX*XPXPPXXXXXGXPAXXPP 903
           +PPPPP     P  AP P+      P PP     G P   PP
Sbjct: 731 SPPPPPPAVIVPTPAPAPI------PVPPPAPIMGGPPPPPP 766


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = -2

Query: 899 GXXAGXPXXXXXGGXGXQXXGERGRGAQKGXRXXXGGGGG 780
           G   G       GG G    G  GRG  +G R    GG G
Sbjct: 26  GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65


>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 164

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 180 NVHLSGIFSLENVVR*RNRQLPQ 112
           N+H+SGI +LENV+  +  QL Q
Sbjct: 103 NLHMSGIENLENVLLEQKEQLQQ 125


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/41 (31%), Positives = 14/41 (34%)
 Frame = +1

Query: 781 PPPPPXKXRXPFWAPLPLSPXX*XPXPPXXXXXGXPAXXPP 903
           PPPPP +       PLP       P PP           PP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,233
Number of Sequences: 5004
Number of extensions: 59134
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)