Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_E12
(921 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78016-6|CAB01441.1| 336|Caenorhabditis elegans Hypothetical pr... 39 0.004
U50311-12|AAA92315.1| 169|Caenorhabditis elegans Hypothetical p... 38 0.008
U42830-3|AAC48275.1| 195|Caenorhabditis elegans Hypothetical pr... 33 0.22
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 31 0.88
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.2
Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 29 3.5
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 3.5
U58747-3|AAL27233.2| 420|Caenorhabditis elegans Hypothetical pr... 29 4.7
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 4.7
Z83239-8|CAH60787.1| 311|Caenorhabditis elegans Hypothetical pr... 29 6.2
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 29 6.2
Z81088-11|CAB03132.1| 339|Caenorhabditis elegans Hypothetical p... 28 8.2
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 28 8.2
AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical... 28 8.2
>Z78016-6|CAB01441.1| 336|Caenorhabditis elegans Hypothetical
protein R186.2a protein.
Length = 336
Score = 39.1 bits (87), Expect = 0.004
Identities = 27/107 (25%), Positives = 54/107 (50%)
Frame = +1
Query: 7 FXTIHYREFLKILIISSCIVKENVDNEKFYLYCCLLWQLSVTSPDNIFQRENARKVNIRF 186
F + + FLK L++++ ++ + FY+ +L + V P ++ R++N +F
Sbjct: 44 FFSPSHLNFLKFLLLTTSLLDVFATSILFYIQPRILSEYQVNVP--VYCYGPCREMNTQF 101
Query: 187 CIALKWPSRTVRIPKSTISLTTWAHATYHSASATGLMSGTRKLANVF 327
C +L +TV I ISLT + YH ++ G + G + + ++F
Sbjct: 102 CFSLFMMWQTVSIAVG-ISLTYTLYFKYHKLNSKGPLFGWKLVRSLF 147
>U50311-12|AAA92315.1| 169|Caenorhabditis elegans Hypothetical
protein C25E10.10 protein.
Length = 169
Score = 38.3 bits (85), Expect = 0.008
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +3
Query: 150 PTRKCP-KGEHSVLYCPQMAEPDC--ENPEVHDFVDYVGPCDVPQCFCDRPNVRNTKTGK 320
P RK +G+ + C EP C ENPE D V C C C + VR++ TGK
Sbjct: 71 PIRKPECEGDEELKACGSACEPTCDNENPEC-DLV-----CMTNVCQCKKGLVRDSATGK 124
Query: 321 CVPESEC 341
CV +++C
Sbjct: 125 CVEKNKC 131
>U42830-3|AAC48275.1| 195|Caenorhabditis elegans Hypothetical
protein C53B7.2 protein.
Length = 195
Score = 33.5 bits (73), Expect = 0.22
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 192 CPQMAEPDCENPEVHDFVDYVGPCDVPQCFCDRPNVRNTKTGKCVPESEC 341
C QM P CE+P VD C P C C P + + +C+P + C
Sbjct: 38 CTQMCPPTCESPNPQCRVD----CTRPSCTC-LPGHVYSNSRQCIPANSC 82
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 31.5 bits (68), Expect = 0.88
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = -2
Query: 902 GGXXAGXPXXXXXGGXGXQXXGERGRGAQKGXRXXXGGGGG 780
GG G GG G + G GRG G GGGGG
Sbjct: 86 GGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGG 126
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = +1
Query: 781 PPPPPXKXRXPFWAPLPLSPXX*XPXPPXXXXXGXPAXXPPQR 909
PPPPP W P P P P PP G P PP R
Sbjct: 287 PPPPPSSG---MWPPPPPPPPGRTPGPP--GMPGMPPPPPPSR 324
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/43 (39%), Positives = 17/43 (39%)
Frame = +1
Query: 781 PPPPPXKXRXPFWAPLPLSPXX*XPXPPXXXXXGXPAXXPPQR 909
PPPPP W P P P P PP G P PP R
Sbjct: 297 PPPPPSSG---MWPPPPPPPPGRTPGPP--GMPGMPPPPPPSR 334
>Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical
protein M02G9.2 protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +3
Query: 162 CPKGEHSVLYCPQMAEPDCENPEVHDFVDYVGPCDVPQCFCDRPNVRNTKTGKCVPESEC 341
C GE C M P+ ++ + P P+C C NVRN TG +P
Sbjct: 30 CTPGEAPKCGCQVMPTPEIGGGQM---ICTCSPPVPPKCVCTEGNVRNIITGPSLPALFK 86
Query: 342 **NCVN 359
NCV+
Sbjct: 87 PYNCVS 92
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = +1
Query: 742 PGXVGQVSXXXXNPPPPPXKXRXPFWAPLPLSPXX*XPXPPXXXXXGXPAXXPP 903
P +G PPPPP P P P P PP G P PP
Sbjct: 507 PPLLGIAPMSTNAPPPPPMPGMAPLSTGAPTPP----PPPPVGMANGGPPPPPP 556
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = +1
Query: 784 PPPPXKXRXPFWAPLPLSPXX*XPXPPXXXXXGXPAXXPP 903
PPPP + P +P P P PP P+ PP
Sbjct: 467 PPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPP 506
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = +1
Query: 784 PPPPXKXRXPFWAPLPLSPXX*XPXPPXXXXXGXPAXXPP 903
PPPP + P +P P P PP P+ PP
Sbjct: 474 PPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPP 513
>U58747-3|AAL27233.2| 420|Caenorhabditis elegans Hypothetical
protein C55F2.1a protein.
Length = 420
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 467 KNVILVYVPYIYSYACIKKRLFQYYKQTL 381
K+ +L ++ + Y CIKK LFQ KQ +
Sbjct: 215 KHFMLSFLQNFHKYNCIKKSLFQLNKQAI 243
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +1
Query: 781 PPPPPXKXRXPFWAPLPLSPXX*XPXPPXXXXXGXPAXXPP 903
PPPPP + P PLP+ P P P P PP
Sbjct: 1359 PPPPPTMSKAPTGVPLPVPP----PPPLFSPSMILPPPPPP 1395
>Z83239-8|CAH60787.1| 311|Caenorhabditis elegans Hypothetical
protein T09F5.16 protein.
Length = 311
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -2
Query: 476 FXVKNVILVYVPYIYSYACIKKRLFQYYKQTL*FYLHV*IY-TILLTFRFRNTFASFRV 303
F +K+V+L+ +PYIY+ + Q L +L +Y IL++ R +SF++
Sbjct: 147 FIIKSVMLIILPYIYTANILTYTTLILLFQNLFVFLCALLYIPILISIRKARHLSSFKL 205
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/55 (32%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Frame = -2
Query: 902 GGXXAGXPXXXXXGGXGXQXXGERGRGAQKGXRXXXGGGGG--XFXXXETCPTXP 744
GG G GG G G G G GGGGG TCP P
Sbjct: 90 GGGYGGAVGGGGGGGYGGGHGGGHGGAVGGGYGGGGGGGGGCQCSPSSNTCPPGP 144
>Z81088-11|CAB03132.1| 339|Caenorhabditis elegans Hypothetical
protein F53F1.11 protein.
Length = 339
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 396 LQTDTLILFTCIDLHNFINIQIPEHIC 316
L+T+T +L IDL NF+ + HIC
Sbjct: 168 LETETGVLTGVIDLTNFVAVYAVAHIC 194
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = -2
Query: 902 GGXXAGXPXXXXXGGXGXQXXGERGRGAQKGXRXXXGGGGG 780
GG G P G G G RG G +G GGGGG
Sbjct: 142 GGDGRGPPGSNGGGDWGGNGGGGRGGGGGRG----GGGGGG 178
>AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical
protein B0238.12 protein.
Length = 166
Score = 28.3 bits (60), Expect = 8.2
Identities = 20/68 (29%), Positives = 24/68 (35%)
Frame = +3
Query: 138 GQHFPTRKCPKGEHSVLYCPQMAEPDCENPEVHDFVDYVGPCDVPQCFCDRPNVRNTKTG 317
GQ P C C EP C NP C C C VRN T
Sbjct: 32 GQRLP---CRGRNEEYKTCGTACEPSCTNPNPM----CTKQCINNVCQCRSGYVRNEITR 84
Query: 318 KCVPESEC 341
+CV +++C
Sbjct: 85 QCVRQAQC 92
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,074,298
Number of Sequences: 27780
Number of extensions: 390792
Number of successful extensions: 1096
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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