Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_E11
         (1001 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    29   0.78 
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    27   3.1  
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc...    26   7.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.2  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   9.6  

>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 29.5 bits (63), Expect = 0.78
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 145 SFTMQQLMIPRPPKKPPH 92
           S T+Q+L +P+PP  PPH
Sbjct: 218 SNTLQELKLPKPPSLPPH 235


>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -2

Query: 208 DVTDSCHNKQQ*Q*NFSLLTFSFTMQQLMIPRPPKKPPHYF 86
           D+ D  H++ + + + S     FT ++ +   PPK+PP+++
Sbjct: 149 DIEDIHHHQHEDEFSSSNKDKGFTYEKPVTELPPKRPPYHY 189


>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 164

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 254 NVHLSGIFSLENVAR*RNRQLPQ 186
           N+H+SGI +LENV   +  QL Q
Sbjct: 103 NLHMSGIENLENVLLEQKEQLQQ 125


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 16/40 (40%), Positives = 16/40 (40%)
 Frame = +2

Query: 653 SXDPLSGXIPATPXSRSXXPTLHHPPPXXPXPCSPRFXXP 772
           S  P S   P TP S    PT   P P  P P SP    P
Sbjct: 121 SAAPPSAPAPPTPQSELRPPTSAPPRPSIPPP-SPASAPP 159


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 668 SGXIPATPXSRSXXPTLHHPPPXXPXP 748
           SG +PA   + +  P    PPP  P P
Sbjct: 204 SGSVPAATAASTASPVKKPPPPAPPKP 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,015
Number of Sequences: 5004
Number of extensions: 37094
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 519268360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)