Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_E10
         (935 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.94 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    28   2.2  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   5.0  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.6  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   6.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 768 PPXXXXPXPPPXXXXXPXXXPPXPXP 845
           PP    P PPP     P   PP P P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/50 (30%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
 Frame = +2

Query: 785 PPXXPXXXXXSXXXPXP-PXXPXXXXXXXPPXXXPXXXXXXPXPPXPXPP 931
           PP  P         P P P  P       PP   P        PP P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +2

Query: 827 PXPPXXPXXXXXXXPPXXXPXXXXXXPXPPXPXPP 931
           P PP  P       PP   P      P PP P PP
Sbjct: 750 PVPPPAPIMGGPPPPPPP-PGVAGAGPPPPPPPPP 783


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 146 VHAFVKRDAPKEDNSINTLAXSAKKTIEELREKVESALAPETVKKNFGT 292
           V A +K+D  +E  S   L      TIE+L+ K E+   P    K F +
Sbjct: 128 VQALIKQDFEREHTSPPELPTKLVNTIEKLKVKEENEAPPVIPAKPFSS 176


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -3

Query: 264 GAKADSTFSLNSSIVFFALSASVFMLLSSLGASRLTNACTLARQIANKIISSLFILD 94
           G  A + F ++ SIV+ A+ ++V   +  + A           ++ NK+ S L++LD
Sbjct: 410 GYMAITKFEVSQSIVYSAIVSAVAEFIRQILAEDQLLLNNFFEELKNKLESDLYLLD 466


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 176 KEDNSINTLAXSAKKTIEELREKVESAL 259
           KE NSI+ L+ S +KTIE  R  + S +
Sbjct: 371 KEKNSISELSPSLQKTIEWARVNLASTI 398


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -1

Query: 113 AACS---FWIFENVFTNRATRINQXQNLKEFRYSEVVMK 6
           AAC+    W + NV T+    IN+   +KEFR S V+++
Sbjct: 183 AACTGTNVWNYSNVLTS----INENGTIKEFRTSRVLLR 217


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/49 (28%), Positives = 15/49 (30%)
 Frame = +2

Query: 785 PPXXPXXXXXSXXXPXPPXXPXXXXXXXPPXXXPXXXXXXPXPPXPXPP 931
           PP        +   P PP  P       PP   P      P  P P PP
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP-PLPP 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,179,137
Number of Sequences: 5004
Number of extensions: 35763
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)