Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_E07
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614...    29   6.4  
02_05_0371 + 28364896-28366182,28366510-28366623,28366861-283671...    28   8.5  

>10_07_0057 +
           12460986-12461036,12461108-12461161,12461420-12461482,
           12461666-12461716,12461996-12462057,12462156-12462318,
           12462829-12462939,12463029-12463166,12463248-12463322,
           12463420-12463540,12464827-12464981,12465080-12465154,
           12465270-12465473,12465670-12465786
          Length = 479

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -2

Query: 401 MMSLKFNGKYFXTISCPLPTHSL*QYSMVFRLLSMI 294
           MM L   GK    I CP+P+HSL   SMV R  +++
Sbjct: 152 MMHLLIRGKK-DGILCPIPSHSLYTDSMVLRGATLV 186


>02_05_0371 +
           28364896-28366182,28366510-28366623,28366861-28367125,
           28367981-28368105
          Length = 596

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 21/60 (35%), Positives = 25/60 (41%)
 Frame = +2

Query: 95  SRLYLRCACSPPARASLNYPRTLLTKTSRXNCTTASSPATTTVLSVRAWNMRAKARAPSS 274
           SRL   C CS PA AS++    L        C  A++ AT    S R     A   A SS
Sbjct: 6   SRLLTACTCSRPAPASVDAEPCLDDALGHSFCYAAAATATAHSSSFRHGISGAALSANSS 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,437,698
Number of Sequences: 37544
Number of extensions: 391591
Number of successful extensions: 967
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)