Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_E05
(913 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0042 + 317586-317640,318128-318185,318799-319236,320426-32... 180 2e-45
08_02_0134 - 13021294-13021350,13021478-13021658,13022383-130224... 77 2e-14
06_03_1339 + 29445324-29445395,29445487-29445598,29445673-294457... 71 2e-12
08_02_0313 - 15659600-15659716,15660376-15660495,15660581-156606... 31 1.7
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745... 31 1.7
09_02_0318 - 7191763-7191879,7192375-7192494,7192568-7192666,719... 30 2.2
>01_01_0042 +
317586-317640,318128-318185,318799-319236,320426-320467,
320468-320648,320838-320867
Length = 267
Score = 180 bits (437), Expect = 2e-45
Identities = 92/200 (46%), Positives = 119/200 (59%), Gaps = 14/200 (7%)
Frame = +2
Query: 296 MDGNDLSSEITRKGILSQGWTRISQVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQ 475
MDG S ++ T S+ +Q LDR TPHA RW+G+ V A + +R+ Q
Sbjct: 64 MDGAADSGTAGAAAAAAKWRTDASRAFQYYLDRSTPHATGRWIGTLAVAAIYALRVYLVQ 123
Query: 476 GWYIVTYALGIYHLNLFIAFLTPKIDPAMDLDDDENGPALPTRASEEFRPFIRRLPEFKF 655
G+YIVTY LGIY LNL I FL+P +DP +GPALPTR S+EF+PFIRRLPEFKF
Sbjct: 124 GFYIVTYGLGIYLLNLLIGFLSPMVDPEAHAAASSDGPALPTRGSDEFKPFIRRLPEFKF 183
Query: 656 WL--------------SVTKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMKRPIK 793
+ ++TK+ LIAF TF F++PVFWPIL+ Y++ LF +TMKR I
Sbjct: 184 CIHTILLTFICLAFRYAITKAFLIAFVMTFFSVFDVPVFWPILLCYWVVLFVLTMKRQIV 243
Query: 794 HMIKYXYLAIYTQQTKVXKC 853
HMIKY Y+ + C
Sbjct: 244 HMIKYKYVPFSVGKQYASSC 263
>08_02_0134 -
13021294-13021350,13021478-13021658,13022383-13022433,
13025134-13025187,13026154-13026248,13026565-13026888
Length = 253
Score = 77.0 bits (181), Expect = 2e-14
Identities = 36/64 (56%), Positives = 46/64 (71%)
Frame = +2
Query: 365 SQVYQSTLDRWTPHAKTRWVGSALVMAAFIIRIITKQGWYIVTYALGIYHLNLFIAFLTP 544
S+ +Q LDR TPH RW+ A V AA+ +R+ G+YIVTYALGIY LNL IAFL+P
Sbjct: 41 SRRFQHLLDRSTPHVGRRWLAFAGVAAAYALRVWFAGGYYIVTYALGIYILNLLIAFLSP 100
Query: 545 KIDP 556
++DP
Sbjct: 101 QVDP 104
Score = 72.5 bits (170), Expect = 4e-13
Identities = 33/73 (45%), Positives = 45/73 (61%)
Frame = +2
Query: 662 SVTKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMKRPIKHMIKYXYLAIYTQQTK 841
S+ K+ IAF TF F++PVFWPIL+ Y++ LF +TMKR I HMIKY Y+ + +
Sbjct: 177 SIVKAFCIAFVLTFFSVFDVPVFWPILLFYWVVLFTVTMKRQILHMIKYRYVPFSFGKQR 236
Query: 842 VXKCRSYSTSELT 880
R S +LT
Sbjct: 237 YNGKRVASADDLT 249
>06_03_1339 +
29445324-29445395,29445487-29445598,29445673-29445756,
29446156-29446182,29446879-29446966,29447070-29447151,
29447414-29447434,29448412-29448605,29449419-29449560,
29449805-29449889,29450123-29450250,29450940-29451032,
29451095-29451327,29453384-29453564,29454122-29454169
Length = 529
Score = 70.5 bits (165), Expect = 2e-12
Identities = 28/52 (53%), Positives = 39/52 (75%)
Frame = +2
Query: 662 SVTKSTLIAFCCTFVDAFNIPVFWPILVMYFITLFCITMKRPIKHMIKYXYL 817
++TK+ +AF TF F++PVFWPIL+ Y++ LF +TMKR I HMIKY Y+
Sbjct: 456 AITKAFCVAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMKRQIVHMIKYKYV 507
>08_02_0313 -
15659600-15659716,15660376-15660495,15660581-15660679,
15660802-15660913,15661025-15661128,15661316-15661495,
15661612-15661881,15662529-15662825,15663432-15663677
Length = 514
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 102 GANFQLLNFIVINCFQINNLKYYAISKIYIVSLFNAGKI 218
GAN++L++ V NC N ISKIY+++ FN+ +
Sbjct: 112 GANYRLIDIPVSNCLNSN------ISKIYVLTQFNSASL 144
>05_05_0276 +
23771233-23771268,23773552-23773897,23774425-23774541,
23774712-23774810,23774949-23775016,23775107-23775181,
23775386-23775931,23776040-23776092,23776163-23776204,
23776314-23776458,23776541-23776651,23777496-23777921,
23778116-23778373
Length = 773
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 326 TRKGILSQGWTRISQVYQSTLDRWTPHAKTRWVGSALVM 442
T+ G RI++ Y+S+ WTP A +G ALV+
Sbjct: 532 TQNPATQNGSVRINKWYESSARAWTPSAAASSIGQALVV 570
>09_02_0318 -
7191763-7191879,7192375-7192494,7192568-7192666,
7192846-7192957,7193058-7193161,7193341-7193520,
7193611-7193880,7194364-7194660,7195283-7195477
Length = 497
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +3
Query: 102 GANFQLLNFIVINCFQINNLKYYAISKIYIVSLFNAGKI 218
GAN++L++ V NC N +SKIY+++ FN+ +
Sbjct: 95 GANYRLIDIPVSNCLNSN------VSKIYVLTQFNSASL 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,753,656
Number of Sequences: 37544
Number of extensions: 433911
Number of successful extensions: 912
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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