Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_E02
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.31 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.6  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    27   2.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
 Frame = +3

Query: 441 PPPX---GGRPXXPXXGGGGGGGKXXFXPPPPXKXXGG 545
           PPP    GG P  P   G  G G     PPPP    GG
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +2

Query: 656 PPPPPPXXXXPPXXPKKKXXARXXPXQXXPP 748
           PPPPPP    P   P         P    PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPP 762



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +3

Query: 657 PPPPPPXXXXPPPXXKKNXRRGXPPHKXXPP 749
           PPP P     PPP          PP    PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +3

Query: 657  PPPPPPXXXXPPPXXKKNXRRGXPPHKXXPP 749
            P PPPP    PPP        G PP    PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAG-PPSAPPPP 1734


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +1

Query: 547 GXXXXPPPPPGXXFFFXXPXPPXXXXXKTQKKK 645
           G    PPPPPG       P PP     K +K K
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 656 PPPPPPXXXXPPXXP 700
           PPPPPP    PP  P
Sbjct: 10  PPPPPPPGFEPPSQP 24


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 629 KHKKKKXXXPPPPPPXXXXPP 691
           +HKK     P PPPP    PP
Sbjct: 218 RHKKVPRGPPSPPPPVLHSPP 238


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/35 (31%), Positives = 11/35 (31%)
 Frame = +3

Query: 441 PPPXGGRPXXPXXGGGGGGGKXXFXPPPPXKXXGG 545
           PPP       P  G G         PPPP     G
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,692,744
Number of Sequences: 5004
Number of extensions: 20916
Number of successful extensions: 207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)