Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_D23
         (941 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.43 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.0  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 0.43
 Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
 Frame = +3

Query: 741 PPXP-PPPXPPXXAGP 785
           PP P PPP PP  +GP
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 723 PPPPXXPPXPPPPXPPXXA 779
           PP P  PP PP    P  A
Sbjct: 338 PPKPAPPPPPPSSSGPDSA 356


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 745  PPPXPPPP 768
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.0 bits (47), Expect = 4.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 750  PPPPXPPXXAGPXF 791
            PPPP PP  +G  +
Sbjct: 1355 PPPPPPPPSSGQAY 1368


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 726 PPPXXPPXPPPPXPP 770
           PPP  PP  PP   P
Sbjct: 46  PPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 9.3
 Identities = 10/36 (27%), Positives = 10/36 (27%)
 Frame = +3

Query: 753 PPPXPPXXAGPXFPLXXXXXXPXXXXPPXAPXAPXP 860
           P P P     P  P       P    PP  P    P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 170 HHRSLGQSDAGEENYELGGHDVL 102
           HH+    + AG +   L GH VL
Sbjct: 920 HHQIQVSTSAGLQTIRLSGHSVL 942


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,981
Number of Sequences: 438
Number of extensions: 6891
Number of successful extensions: 23
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)