Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_D22
         (952 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    38   0.002
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    36   0.008
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.045
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.10 
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    30   0.55 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   2.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.2  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   2.9  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    27   3.9  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   9.0  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    26   9.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +1

Query: 859 PPGXXPPPPXPXGXHNPPPXPPPXXP 936
           PPG  PPPP P G   P   PPP  P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 31.1 bits (67), Expect = 0.24
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = +1

Query: 856 PPPGXXPPPPXP--XGXHNPPPXPPP 927
           PP    PPPP P       PPP PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 29/76 (38%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
 Frame = -3

Query: 941 GXGXXGGGXGGGLWXPXGXGG-GGXXPGGGXXXXXXXXXXGPVFXRGXRGSXVFR*GGXG 765
           G G  GGG GG    P G GG GG    G           GP    G  G      GG G
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFG 248

Query: 764 GEXG--GGTXGXFXGG 723
           G  G  GG  G F GG
Sbjct: 249 GGLGGFGGGPGGFGGG 264



 Score = 29.5 bits (63), Expect = 0.73
 Identities = 25/72 (34%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
 Frame = -3

Query: 935 GXXGGGXGGGLWXPXGXGGGGXXPGGGXXXXXXXXXXGPVFXRGXRGSXVFR*GGXGGEX 756
           G  GGG GG      G G GG  PG G                G  G      G  GG  
Sbjct: 184 GHNGGGFGG-----FGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPG 238

Query: 755 G-GGTXGXFXGG 723
           G GG  G F GG
Sbjct: 239 GFGGGPGGFGGG 250



 Score = 29.5 bits (63), Expect = 0.73
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -3

Query: 941 GXGXXGGGXGGGLWXPXGXGGGGXXPGG 858
           G G  GGG GG    P G GGG    GG
Sbjct: 243 GPGGFGGGLGGFGGGPGGFGGGPGGHGG 270



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -3

Query: 941 GXGXXGGGXGGGLWXPXGXGGGG 873
           G G  GGG GG    P G GG G
Sbjct: 250 GLGGFGGGPGGFGGGPGGHGGPG 272


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.045
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
 Frame = +1

Query: 856 PPP----GXXPPPPXPXGXHNPPPXPPPXXP 936
           PPP    G  PPPP P G     P PPP  P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 875 PPPXPXXXXTTPPXPPPPXP 934
           PPP P      PP PPPP P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 856 PPPGXXPPPPXPXGXHNPPPXPPP 927
           P P   P PP       PPP PPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
 Frame = +1

Query: 856 PPPGXXPPPPXPXGXHNPPPXP----PPXXPYP 942
           PPP    P P P     PPP P    PP  P P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 875 PPPXPXXXXTTPPXPPPPXPXTP 943
           PPP P         PPPP P  P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 856 PPPGXXPPPPXPXGXHNPPPXPP 924
           P P   PPP    G   PPP PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPP 768


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +1

Query: 856  PPPGXXPPPPX-PXGXHNPPPXPPPXXP 936
            PPP   PPPP  P     PP  PPP  P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 857  PLRXXAPPPXPXXXXTTPPXPPPPXPXTPXP 949
            P+    PP  P      P  PPPP P +  P
Sbjct: 1711 PMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 856  PPPGXXPPPPXPXGXHNPPPXPPPXXPYP 942
            PP    P PP P     PPP  PP    P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 941 GXGXXGGGXGGGLWXPXGXGGGGXXPG 861
           G G  GGG  GG +   G G GG  PG
Sbjct: 443 GGGFPGGGFPGGSYNSQGFGMGGGFPG 469


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 856  PPPGXXPPPPXPXGXHNPPPXPPPXXPYP 942
            PPP   PP P P     P P P    P P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +1

Query: 856  PPPGXXPPPPXPXGXHNPPPXPPPXXP 936
            PPP   PP P P     P P P    P
Sbjct: 1211 PPPSTAPPVPTPSAGLPPVPVPTAKAP 1237



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/25 (44%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
 Frame = +2

Query: 878  PPXPXXXXTTPPXPPPPX-PXTPXP 949
            PP P      PP PPP   P  P P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTP 1222


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 859 PPGXXPPPPXPXGXHNPPPXPPP 927
           PP    P       +NPPP PPP
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPP 195



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 856 PPPGXXPPPPXPXGXHNPPPXPPP 927
           PP    P    P   + PPP PPP
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPPP 196


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
 Frame = +2

Query: 857 PLRXXAP--PPXPXXXXTTPPXPP--PPXPXTPXP 949
           PL   AP  PP P      PP PP  P  P  P P
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 859 PPGXXPPPPXPXGXHNPPPXPPPXXPYP 942
           P G    PP P     PPP P P    P
Sbjct: 460 PAGMPAAPPLPPAAPAPPPAPAPAPAAP 487



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 856 PPPGXXPPPPXPXGXHNPPPXPPPXXP 936
           P  G  PPP       + PP PPP  P
Sbjct: 370 PSTGRQPPPLSSSRAVSNPPAPPPAIP 396



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
 Frame = +2

Query: 860 LRXXAPPPXPXXXXTTPPXPP--PPXPXTP 943
           L   APPP P     T   PP  PP P  P
Sbjct: 248 LSAPAPPPIPPPSNGTVSSPPNSPPRPIAP 277



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 859 PPGXXPPPPXPXGXHNPPPXPP 924
           PP     PP P G    PP PP
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPP 471


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 21/62 (33%), Positives = 21/62 (33%)
 Frame = -3

Query: 935 GXXGGGXGGGLWXPXGXGGGGXXPGGGXXXXXXXXXXGPVFXRGXRGSXVFR*GGXGGEX 756
           G  GG  GG      G GG G   GG           G     G RG      GG GG  
Sbjct: 9   GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAK 68

Query: 755 GG 750
           GG
Sbjct: 69  GG 70


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 857 PLRXXAPPPXPXXXXTTPPXPPPP 928
           P+R    PP P    + PP  PPP
Sbjct: 41  PVRGLTIPPPPSVDHSAPPSGPPP 64


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 862 PGXXPPPPXPXGXHNPPPXP 921
           P    P P P   H+PPP P
Sbjct: 729 PAPPTPAPTPAVKHHPPPPP 748


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +2

Query: 860 LRXXAPPPXPXXXXTTPPXPPPPXP 934
           +R   PPP      T    PPPP P
Sbjct: 6   IRAVQPPPNDSRSSTPATGPPPPIP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,927,211
Number of Sequences: 5004
Number of extensions: 23473
Number of successful extensions: 337
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)