Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_D21
         (831 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX537888-1|CAD97884.1|  500|Homo sapiens hypothetical protein pr...    32   2.2  
BC018135-1|AAH18135.1|  471|Homo sapiens pre-mRNA cleavage facto...    32   2.2  
AK022591-1|BAB14118.1|  237|Homo sapiens protein ( Homo sapiens ...    32   2.2  
AJ275970-1|CAC81661.1|  471|Homo sapiens pre-mRNA cleavage facto...    32   2.2  
BC117407-1|AAI17408.1| 1081|Homo sapiens LOC152485 protein protein.    25   6.2  
AK091130-1|BAC03591.1| 1077|Homo sapiens protein ( Homo sapiens ...    25   6.2  

>BX537888-1|CAD97884.1|  500|Homo sapiens hypothetical protein
           protein.
          Length = 500

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 508 PPPPPPXXKKKXFFFXXPPPXGXXXKKIXPPP 603
           PPP PP       F   PPP G   + + PPP
Sbjct: 268 PPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPP 299


>BC018135-1|AAH18135.1|  471|Homo sapiens pre-mRNA cleavage factor
           I, 59 kDa subunit protein.
          Length = 471

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 508 PPPPPPXXKKKXFFFXXPPPXGXXXKKIXPPP 603
           PPP PP       F   PPP G   + + PPP
Sbjct: 239 PPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPP 270


>AK022591-1|BAB14118.1|  237|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12529 fis, clone NT2RM4000156, weakly similar to
           H.sapiens HPBRII-7 gene. ).
          Length = 237

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 508 PPPPPPXXKKKXFFFXXPPPXGXXXKKIXPPP 603
           PPP PP       F   PPP G   + + PPP
Sbjct: 5   PPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPP 36


>AJ275970-1|CAC81661.1|  471|Homo sapiens pre-mRNA cleavage factor
           I, 59 kDa subunit protein.
          Length = 471

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 508 PPPPPPXXKKKXFFFXXPPPXGXXXKKIXPPP 603
           PPP PP       F   PPP G   + + PPP
Sbjct: 239 PPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPP 270


>BC117407-1|AAI17408.1| 1081|Homo sapiens LOC152485 protein protein.
          Length = 1081

 Score = 25.4 bits (53), Expect(2) = 6.2
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +1

Query: 508 PPPPPPXXKKKXFFFXXPPPXGXXXK 585
           PPPPPP   +       P P G   K
Sbjct: 335 PPPPPPPPPQSLELLLLPVPKGRVSK 360



 Score = 23.8 bits (49), Expect(2) = 6.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 487 KKXKXXXPPPPPP 525
           KK +   PPPPPP
Sbjct: 322 KKPEKVTPPPPPP 334


>AK091130-1|BAC03591.1| 1077|Homo sapiens protein ( Homo sapiens
           cDNA FLJ33811 fis, clone CTONG2002095. ).
          Length = 1077

 Score = 25.4 bits (53), Expect(2) = 6.2
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +1

Query: 508 PPPPPPXXKKKXFFFXXPPPXGXXXK 585
           PPPPPP   +       P P G   K
Sbjct: 335 PPPPPPPPPQSLELLLLPVPKGRVSK 360



 Score = 23.8 bits (49), Expect(2) = 6.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 487 KKXKXXXPPPPPP 525
           KK +   PPPPPP
Sbjct: 322 KKPEKVTPPPPPP 334


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,326,341
Number of Sequences: 237096
Number of extensions: 2574667
Number of successful extensions: 26985
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19708
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10426655866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)