Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_D17
         (976 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       30   0.036
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   2.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.9 bits (64), Expect = 0.036
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = +1

Query: 751 PPPPPXXXGPPPPPGLKXXXRPPPPXXPPPXPPPXPPPXXXP 876
           P P P     P  P  +    P P   PPP  PP  PP   P
Sbjct: 21  PGPQPSPHQSPQAP--QRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +1

Query: 757 PPPXXXGPPPPPGLKXXXRPPPPXXPPPXPPPXPPPXXXP 876
           P     GP P P         P    PP P   PPP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQA---PQRGSPPNPSQGPPPGGPP 52



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 677 PPTPXXXPGXGXXPXAPP 730
           PP P   P  G  P APP
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 832 PPPXPPPXPPPXXXP 876
           P P PPP PP    P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 835 PPXPPPXPPPXXXPXP 882
           PP P P PPP     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 4.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 814 PPPPXXPPPXPPPXPP 861
           PP P  PPP P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 4.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 817 PPPXXPPPXPPPXPPP 864
           PP   PPP PP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 4.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 739 KXXKPPPPPXXXGP 780
           K   PPPPP   GP
Sbjct: 340 KPAPPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 9.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 760 PPXXXGPPPPP 792
           PP    PPPPP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect(2) = 2.9
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 832  PPPXPPP 852
            PPP PPP
Sbjct: 1355 PPPPPPP 1361



 Score = 20.6 bits (41), Expect(2) = 2.9
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 844  PPPXPPP 864
            PPP PPP
Sbjct: 1356 PPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,534
Number of Sequences: 438
Number of extensions: 11143
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32169774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)