Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_D16
         (977 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148...    33   0.35 
07_03_1136 + 24218601-24218734,24218769-24219906                       33   0.46 

>02_01_0003 +
           13079-13610,14005-14312,14364-14549,14620-14707,
           14807-14887,14980-15044,15357-15497,15578-15694,
           15995-16237,16326-16383,18127-18224
          Length = 638

 Score = 33.1 bits (72), Expect = 0.35
 Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = -3

Query: 498 GXPPXXPGRPXPGGGXGXXXPGGAXXXGXPG--PGXXP 391
           G P   PG   PGG  G   PGG    G PG  PG  P
Sbjct: 531 GFPGGMPGGGFPGGMPGGGFPGGMPGGGFPGGMPGGFP 568



 Score = 29.1 bits (62), Expect = 5.6
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = -3

Query: 498 GXPPXXPGRPXPGGGXGXXXPGGAXXXGXPG 406
           G P   PG   PGG  G   PGGA   G PG
Sbjct: 549 GFPGGMPGGGFPGGMPGGF-PGGAMPGGVPG 578


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 32.7 bits (71), Expect = 0.46
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = -3

Query: 498 GXPPXXPGRPXPGGGXGXXXPGGAXXXGXP 409
           G PP   G P P GG G   PGG    G P
Sbjct: 89  GLPPGGGGAPGPLGGGGARPPGGGGGGGPP 118



 Score = 28.3 bits (60), Expect = 9.8
 Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -3

Query: 477 GRPXPGGGXGXXXPGGA--XXXGXPGPGXXP 391
           GRP PGGG G   PG A     G  GPG  P
Sbjct: 170 GRP-PGGGGGGGGPGRAPGGGGGGGGPGRAP 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,742,948
Number of Sequences: 37544
Number of extensions: 78735
Number of successful extensions: 404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2846681820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)