Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_D15
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   142   6e-35
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   3.6  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    27   4.7  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   4.7  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   4.7  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    26   6.2  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    26   6.2  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  142 bits (344), Expect = 6e-35
 Identities = 70/131 (53%), Positives = 98/131 (74%), Gaps = 2/131 (1%)
 Frame = +2

Query: 89  KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 262
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 263 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 442
            P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123

Query: 443 YDAILEDLVFP 475
           ++AILED+VFP
Sbjct: 124 HNAILEDIVFP 134



 Score = 65.7 bits (153), Expect = 8e-12
 Identities = 29/53 (54%), Positives = 37/53 (69%)
 Frame = +3

Query: 480 EIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 638
           EI+GKR R   DG + IKV LD     T+++K+ +F SVY KLTG+ VTFEFP
Sbjct: 136 EIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFP 188


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -2

Query: 381 LGLGRILRSPTKTTCLPLNFFSSSRTS 301
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +2

Query: 20  TIGNSLRFESISFPPAKVVKMSTKIIKASGA---EADSFETSISQALVELETNSDLKAQL 190
           T+G S+RFE ++ P   +  M+  ++          + +   I     E   N+D+   L
Sbjct: 568 TVGYSIRFEDVTGPDTVIKYMTDGVLLRESLMQNNLEKYSVIIMDEAHERSLNTDILMGL 627

Query: 191 RELYITKAKEIEL 229
            +  +++ ++I+L
Sbjct: 628 LKKVLSRRRDIKL 640


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 354  ETVRSCLSPATKPVLLTNKRGHAQ 425
            E+ +  ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +2

Query: 251 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 343
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 409 KEATLKDIDLCVRCYPRGLGLPC 477
           ++AT++++D C  C  RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 474 LPEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF-QSVYKKLTGREVTFEFP 638
           L + +GK+  ++   ++L  VHL  +   TIE  +  F Q+V  + T    +F+ P
Sbjct: 578 LSKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLFQSTKSTASFQLP 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,084
Number of Sequences: 5004
Number of extensions: 54817
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)