Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_D10
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 37 0.003
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.098
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.30
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.39
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.91
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.6
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 4.8
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 6.4
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 25 8.5
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 538 PPPKKPPPXXXPPPXXXPPPPXXGXKKK 621
PPP PPP PP PPPP KK+
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKKR 36
Score = 35.1 bits (77), Expect = 0.010
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +3
Query: 531 GAPPPXKTPPXXXPPPPXKXPPPPXGXKKK 620
G PPP PP PP PPPP KK+
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36
Score = 29.9 bits (64), Expect = 0.39
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Frame = +2
Query: 542 PXKNPPXXXPP----PPXKXPPPPXGGXKK 619
P NPP PP PP + PPPP G K
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVK 34
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.098
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +3
Query: 507 PPXXXXXXGAPPPXKTPPXXXPPPPXKXPPPP 602
PP G PPP P PP PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Frame = +3
Query: 507 PPXXXXXXGAPPPXKTPP----XXXPPPPXKXPPPP 602
PP AP P PP PPPP PPPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPP---PPPP 768
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/51 (27%), Positives = 14/51 (27%)
Frame = +3
Query: 507 PPXXXXXXGAPPPXKTPPXXXPPPPXKXPPPPXGXKKKXXXXXXXXXXPPP 659
PP P P P PP P PPP PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/53 (30%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
Frame = +1
Query: 535 RPPPKKPP----PXXXPPPXXXPPP-PXXGXKKKXXXXXXXXXXXPPPXXKKP 678
+ PP PP P P P PPP P G PPP P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.30
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Frame = +3
Query: 507 PPXXXXXXGAPPPXKTPPXXXPPP----PXKXPPPP 602
PP PPP PP PP P PPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 29.9 bits (64), Expect = 0.39
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 536 APPXKNPPXXXPPPPXKXPPPP 601
APP + P PPPP PPPP
Sbjct: 1698 APPQMSAPTP-PPPPMSVPPPP 1718
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 538 PPPKKPPPXXXPPPXXXPPP 597
PPP PP PP PPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 541 PPKKPPPXXXPPPXXXPPPP 600
P PPP PPP PP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMP 1724
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/37 (37%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Frame = +3
Query: 510 PXXXXXXGAPP----PXKTPPXXXPPPPXKXPPPPXG 608
P APP P PP PPP PP P G
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAG 1726
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 538 PPPKKPPPXXXPPPXXXPPPP 600
PPP PP PP PP P
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLP 1736
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.39
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 534 APPPXKTPPXXXPPPPXKXPPPP 602
+PP + P PP P K PPPP
Sbjct: 183 SPPSAPSLPSAVPPMPPKVPPPP 205
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 535 RPPPKKPPPXXXPPPXXXPPPP 600
RPP PP PPP PP
Sbjct: 138 RPPTSAPPRPSIPPPSPASAPP 159
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 0.91
Identities = 29/100 (29%), Positives = 31/100 (31%), Gaps = 4/100 (4%)
Frame = +3
Query: 315 KPXGTXPXPFWAXXGXXEIPXXFFXPPPX-FKXGXPPPXKXXXX--PFXKKRGAXXXXXX 485
KP P P A G +P PP G PP K P GA
Sbjct: 1106 KPSVAVP-PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
Query: 486 XXXXXXXPPXXXXXXGAPPPXKTPPXXXP-PPPXKXPPPP 602
PP G PP K P PPP + PP P
Sbjct: 1165 SVAA---PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = +1
Query: 538 PPPKKPPPXXXPPPXXXPPPPXXGXKKKXXXXXXXXXXXPPPXXKKPLXPXP 693
PPP + PP P PP P P P K P P P
Sbjct: 1192 PPPSEAPP-VPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 7/29 (24%)
Frame = +3
Query: 537 PPPXKTPPXXXP-------PPPXKXPPPP 602
PPP + PP P PPP PP P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +3
Query: 507 PPXXXXXXGAPPPXKTPPXXXPPPPXKXPPPP 602
PP A P P PPPP PPPP
Sbjct: 168 PPSFQPPSAAAPATSLPSDYNPPPP--PPPPP 197
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 540 PPXKTPPXXXPPPPXKXPPPP 602
PP TP P P PPPP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPP 244
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Frame = +3
Query: 507 PPXXXXXXGAPPPXKTPPXXXPPPPXKXPP--PP 602
PP + PP TPP P P PP PP
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +3
Query: 507 PPXXXXXXGAPPPXKTPPXXXPPPPXKXPPPPXG 608
PP + PP + P P PP PPP G
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPP-PIPPPSNG 262
Score = 26.6 bits (56), Expect = 3.7
Identities = 19/69 (27%), Positives = 19/69 (27%)
Frame = +3
Query: 393 PPXFKXGXPPPXKXXXXPFXKKRGAXXXXXXXXXXXXXPPXXXXXXGAPPPXKTPPXXXP 572
PP PP P GA PP APP PP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPM-GAPAAPPLPPSAPIAPPLPAGMPAAPP---LPPAAPA 475
Query: 573 PPPXKXPPP 599
PPP P P
Sbjct: 476 PPPAPAPAP 484
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -3
Query: 599 GGGGFXXGGGXXXGGGFXGGGR 534
G GGF GG GGF GGGR
Sbjct: 452 GRGGFGGRGGFGGRGGF-GGGR 472
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 617 FFXPXXGGGGFXXGGGXXXGGGFXGGG 537
F P GGG GG GGF G G
Sbjct: 440 FSTPRTGGGSRGGRGGFGGRGGFGGRG 466
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -3
Query: 599 GGGGFXXGGGXXXGGGFXGGGRXXXXXXXXGG 504
G GG G G GGF GG R GG
Sbjct: 146 GRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGG 177
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -3
Query: 593 GGFXXGGGXXXGGGFXGGGRXXXXXXXXGG 504
GGF G GGG GG R GG
Sbjct: 160 GGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +1
Query: 505 PPXXXXXXXXRPPPKKPPPXXXPPP 579
PP R PP PPP PP
Sbjct: 214 PPKFRHKKVPRGPPSPPPPVLHSPP 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,255,572
Number of Sequences: 5004
Number of extensions: 43573
Number of successful extensions: 349
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -