Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_D06
         (932 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen pr...    31   4.5  
X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 col...    31   4.5  
BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein.       31   4.5  
AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen...    31   4.5  
AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.              31   4.5  

>X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen
           protein.
          Length = 1078

 Score = 31.5 bits (68), Expect = 4.5
 Identities = 24/70 (34%), Positives = 30/70 (42%)
 Frame = +2

Query: 587 GPXEIRGASRDRQRQAVRGQPGRR*IRANTPGAGXPHHMXDDPRCPPWXAPTVXXRXSSP 766
           GP   RGA+ +  R  V G PG R      PG+  P     D +  P  +     R   P
Sbjct: 366 GPAGPRGAAGEPGRDGVPGGPGMR----GMPGS--PGGPGSDGKPGPPGSQGESGRPGPP 419

Query: 767 HXSGPKYQPG 796
             SGP+ QPG
Sbjct: 420 GPSGPRGQPG 429


>X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3
           collagen protein.
          Length = 1466

 Score = 31.5 bits (68), Expect = 4.5
 Identities = 24/70 (34%), Positives = 30/70 (42%)
 Frame = +2

Query: 587 GPXEIRGASRDRQRQAVRGQPGRR*IRANTPGAGXPHHMXDDPRCPPWXAPTVXXRXSSP 766
           GP   RGA+ +  R  V G PG R      PG+  P     D +  P  +     R   P
Sbjct: 513 GPAGPRGAAGEPGRDGVPGGPGMR----GMPGS--PGGPGSDGKPGPPGSQGESGRPGPP 566

Query: 767 HXSGPKYQPG 796
             SGP+ QPG
Sbjct: 567 GPSGPRGQPG 576


>BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein.
          Length = 1163

 Score = 31.5 bits (68), Expect = 4.5
 Identities = 24/70 (34%), Positives = 30/70 (42%)
 Frame = +2

Query: 587 GPXEIRGASRDRQRQAVRGQPGRR*IRANTPGAGXPHHMXDDPRCPPWXAPTVXXRXSSP 766
           GP   RGA+ +  R  V G PG R      PG+  P     D +  P  +     R   P
Sbjct: 513 GPAGPRGAAGEPGRDGVPGGPGMR----GMPGS--PGGPGSDGKPGPPGSQGESGRPGPP 566

Query: 767 HXSGPKYQPG 796
             SGP+ QPG
Sbjct: 567 GPSGPRGQPG 576


>AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen
           alpha 1 chain protein.
          Length = 1466

 Score = 31.5 bits (68), Expect = 4.5
 Identities = 24/70 (34%), Positives = 30/70 (42%)
 Frame = +2

Query: 587 GPXEIRGASRDRQRQAVRGQPGRR*IRANTPGAGXPHHMXDDPRCPPWXAPTVXXRXSSP 766
           GP   RGA+ +  R  V G PG R      PG+  P     D +  P  +     R   P
Sbjct: 513 GPAGPRGAAGEPGRDGVPGGPGMR----GMPGS--PGGPGSDGKPGPPGSQGESGRPGPP 566

Query: 767 HXSGPKYQPG 796
             SGP+ QPG
Sbjct: 567 GPSGPRGQPG 576


>AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.
          Length = 1466

 Score = 31.5 bits (68), Expect = 4.5
 Identities = 24/70 (34%), Positives = 30/70 (42%)
 Frame = +2

Query: 587 GPXEIRGASRDRQRQAVRGQPGRR*IRANTPGAGXPHHMXDDPRCPPWXAPTVXXRXSSP 766
           GP   RGA+ +  R  V G PG R      PG+  P     D +  P  +     R   P
Sbjct: 513 GPAGPRGAAGEPGRDGVPGGPGMR----GMPGS--PGGPGSDGKPGPPGSQGESGRPGPP 566

Query: 767 HXSGPKYQPG 796
             SGP+ QPG
Sbjct: 567 GPSGPRGQPG 576


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,939,693
Number of Sequences: 237096
Number of extensions: 2623586
Number of successful extensions: 4693
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4674
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12214492840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)