Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_D06
         (932 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

J03502-1|AAA28972.1|  252|Drosophila melanogaster protein ( D.me...    51   3e-06
AY060414-1|AAL25453.1|  252|Drosophila melanogaster LD37158p pro...    51   3e-06
AE014297-2001|AAF55164.2|  252|Drosophila melanogaster CG4898-PA...    51   3e-06
AE014297-1991|AAF55163.2|  339|Drosophila melanogaster CG4898-PB...    50   5e-06
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ...    29   9.1  
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ...    29   9.1  
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ...    29   9.1  

>J03502-1|AAA28972.1|  252|Drosophila melanogaster protein (
           D.melanogaster tropomyosinII non-muscle isoform mRNA,
           complete cds. ).
          Length = 252

 Score = 50.8 bits (116), Expect = 3e-06
 Identities = 33/102 (32%), Positives = 41/102 (40%)
 Frame = +3

Query: 393 MTTNMQQGTILDVLKKKMRQTXXXXXXXXXXXXXYHKRLXVEIMXXXXXXXXXXXXXXXI 572
           MTT + QGT+LDVLKKKMRQT             +HKRL +E++               I
Sbjct: 1   MTTRLPQGTLLDVLKKKMRQTKEEMEKYKDECEEFHKRLQLEVVRREEAESEVAALNRRI 60

Query: 573 QXXXXXXXXXXXXXATANAKLXXXXXXXXXXXXIRQALXTXT 698
           Q              +A AKL            IR+AL   T
Sbjct: 61  QLLEEDLERSEERLGSATAKLSEASQAADESERIRKALENRT 102


>AY060414-1|AAL25453.1|  252|Drosophila melanogaster LD37158p
           protein.
          Length = 252

 Score = 50.8 bits (116), Expect = 3e-06
 Identities = 33/102 (32%), Positives = 42/102 (41%)
 Frame = +3

Query: 393 MTTNMQQGTILDVLKKKMRQTXXXXXXXXXXXXXYHKRLXVEIMXXXXXXXXXXXXXXXI 572
           MTT++ QGT+LDVLKKKMRQT             +HKRL +E++               I
Sbjct: 1   MTTSIPQGTLLDVLKKKMRQTKEEMEKYKDECEEFHKRLQLEVVRREEAESEVAALNRRI 60

Query: 573 QXXXXXXXXXXXXXATANAKLXXXXXXXXXXXXIRQALXTXT 698
           Q              +A AKL            IR+AL   T
Sbjct: 61  QLLEEDLERSEERLGSATAKLSEASQAADESERIRKALENRT 102


>AE014297-2001|AAF55164.2|  252|Drosophila melanogaster CG4898-PA,
           isoform A protein.
          Length = 252

 Score = 50.8 bits (116), Expect = 3e-06
 Identities = 33/102 (32%), Positives = 42/102 (41%)
 Frame = +3

Query: 393 MTTNMQQGTILDVLKKKMRQTXXXXXXXXXXXXXYHKRLXVEIMXXXXXXXXXXXXXXXI 572
           MTT++ QGT+LDVLKKKMRQT             +HKRL +E++               I
Sbjct: 1   MTTSIPQGTLLDVLKKKMRQTKEEMEKYKDECEEFHKRLQLEVVRREEAESEVAALNRRI 60

Query: 573 QXXXXXXXXXXXXXATANAKLXXXXXXXXXXXXIRQALXTXT 698
           Q              +A AKL            IR+AL   T
Sbjct: 61  QLLEEDLERSEERLGSATAKLSEASQAADESERIRKALENRT 102


>AE014297-1991|AAF55163.2|  339|Drosophila melanogaster CG4898-PB,
           isoform B protein.
          Length = 339

 Score = 50.0 bits (114), Expect = 5e-06
 Identities = 24/49 (48%), Positives = 32/49 (65%)
 Frame = +3

Query: 378 QK*IKMTTNMQQGTILDVLKKKMRQTXXXXXXXXXXXXXYHKRLXVEIM 524
           +K  KMTT++ QGT+LDVLKKKMRQT             +HKRL +E++
Sbjct: 82  KKTTKMTTSIPQGTLLDVLKKKMRQTKEEMEKYKDECEEFHKRLQLEVV 130


>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
           protein.
          Length = 1103

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 380 KVNQNDDKHAARNDFRRFEEENASNERGN 466
           ++N   D+   RN+  +F+  NAS E GN
Sbjct: 450 QINDAKDREFVRNELNKFKSLNASGESGN 478


>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
           protein.
          Length = 1103

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 380 KVNQNDDKHAARNDFRRFEEENASNERGN 466
           ++N   D+   RN+  +F+  NAS E GN
Sbjct: 450 QINDAKDREFVRNELNKFKSLNASGESGN 478


>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
           protein.
          Length = 1103

 Score = 29.1 bits (62), Expect = 9.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 380 KVNQNDDKHAARNDFRRFEEENASNERGN 466
           ++N   D+   RN+  +F+  NAS E GN
Sbjct: 450 QINDAKDREFVRNELNKFKSLNASGESGN 478


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,961,655
Number of Sequences: 53049
Number of extensions: 754752
Number of successful extensions: 1597
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1595
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4607820675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)