Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_D06
         (932 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    26   0.43 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.0  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 26.2 bits (55), Expect = 0.43
 Identities = 14/51 (27%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = -2

Query: 400 VVILIHFCVKIECLNANKQRHLRPTRENAN*QPRSSLLF-RIVEMGSARTQ 251
           ++++++   +I C+ A++ R+L  T E+ N +PR ++L  R   + + RT+
Sbjct: 211 MLVMLYVYGRISCVIASRHRNLEAT-ESENVRPRRNVLIERAKSIRARRTE 260


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 262 ARTQPANKMAATELGRYKNIVTALITGNYVSLV 164
           A T PA   A   LG Y N +  ++  + VS +
Sbjct: 281 AETMPATSDAVPLLGTYFNCIMFMVASSVVSTI 313


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 84 PNRIDFDSGTRVV 46
          PNR+DF +GT  V
Sbjct: 10 PNRVDFSNGTGAV 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,429
Number of Sequences: 438
Number of extensions: 5136
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)