Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_D04
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.098
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    30   0.39 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.098
 Identities = 16/48 (33%), Positives = 16/48 (33%)
 Frame = +2

Query: 755 PPPXIX*PPXX*XPPXPXSPALXXXXXPXXPLXPPPXXXPXXPPPXPP 898
           PPP     P     P P  P       P  P  PP       PPP PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
 Frame = +2

Query: 797 PXPXSPALXXXXXPXXPLX-PPPXXXPXXPPPXPP 898
           P P  PA+        P+  PPP      PPP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +2

Query: 794 PPXPXSPALXXXXXPXXPLXPPPXXXPXXPPPXPP 898
           PP P +  +        P+ PP       PPP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
 Frame = +2

Query: 758 PPXIX*PPXX*XPPXPXSPALXXXXXPXXPLXPP-PXXXPXXPPPXP 895
           PP    PP    PP P +P +        P+ PP     P  P P P
Sbjct: 494 PPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFP 540


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = +2

Query: 776 PPXX*XPPXPXSPALXXXXXPXXPLXPPPXXXPXXPPPXP 895
           PP    PP P S        P  P  PPP   P   PP P
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPP--SPASAPPIP 161



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/51 (33%), Positives = 17/51 (33%)
 Frame = +2

Query: 755 PPPXIX*PPXX*XPPXPXSPALXXXXXPXXPLXPPPXXXPXXPPPXPPXXL 907
           PP     PP     P P  PA      P  P    P   P  PP  PP  L
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSL--PSAVPPMPPKVPPPPL 206



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = +2

Query: 758 PPXIX*PPXX*XPPXPXSPALXXXXXPXXPLXPPPXXXPXXPPPXPP 898
           PP    P     PP P S        P  P   PP   P  P   PP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
 Frame = +2

Query: 794 PPXPXSPALXXXXXPXXPLXPPPXXXPXXP--PPXPP 898
           PP P  P+L     P  P   PP      P  PP PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = +2

Query: 749  TXPPPXIX*PPXX*XPPXPXSPALXXXXXPXXPLXPPPXXXPXXPPP 889
            T PPP +  PP    PP P  P       P  PL  P    P  P P
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGP----PSAPPPPL--PASSAPSVPNP 1746


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 836 PXXPLXPPPXXXPXXPPPXPP 898
           P  P  PP    P  PPP PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,994
Number of Sequences: 5004
Number of extensions: 62193
Number of successful extensions: 193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)