Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_C23
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   206   3e-54
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   204   1e-53

>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  206 bits (503), Expect = 3e-54
 Identities = 101/188 (53%), Positives = 118/188 (62%)
 Frame = +3

Query: 93  MGAYXYIXXLYXKKLSDVMRFLLXVRVWQYRQLTXMHRAPRPTRPDKAXXLXYRAKQXYX 272
           MGAY Y+  L  KK SDV  FL  VR W+YRQ+  +HRA RP+RPDKA  L Y+AKQ Y 
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 273 XXXXXXXXXXXKXPVAKGATYGKPKSHGVNQLKPTRNLQSIAEERVGXXCGGLXVLSSYW 452
                      K PV KG TYGKP   GVN LK  R+ +  AEERVG  C  L VL+SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 453 VAQXSSYXYFXVILXDPSHKAIXXXPXINXIVNAVHXHXEMXGLTSXGRXSRGLGKAHXY 632
           V Q ++Y +F VIL DPSHKAI   P IN IVN VH H E  GLTS G+ SRG+GK H Y
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRY 180

Query: 633 SSNKXXLT 656
           +++    T
Sbjct: 181 NNSPQHAT 188


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  204 bits (499), Expect = 1e-53
 Identities = 100/188 (53%), Positives = 118/188 (62%)
 Frame = +3

Query: 93  MGAYXYIXXLYXKKLSDVMRFLLXVRVWQYRQLTXMHRAPRPTRPDKAXXLXYRAKQXYX 272
           MGAY Y+  L  KK SDV  FL  VR W+YRQ+  +HRA RP+RPDKA  L Y+AKQ Y 
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 273 XXXXXXXXXXXKXPVAKGATYGKPKSHGVNQLKPTRNLQSIAEERVGXXCGGLXVLSSYW 452
                      K PV KG TYGKP   GVN LK  R+ +  AEERVG  C  L VL+SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 453 VAQXSSYXYFXVILXDPSHKAIXXXPXINXIVNAVHXHXEMXGLTSXGRXSRGLGKAHXY 632
           V Q ++Y +F VIL DPSHKAI   P IN IVN VH H E  GLTS G+ SRG+GK H +
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRF 180

Query: 633 SSNKXXLT 656
           +++    T
Sbjct: 181 NNSPQHAT 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,057
Number of Sequences: 5004
Number of extensions: 38162
Number of successful extensions: 58
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)