Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_C23
         (920 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390...   189   3e-48
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493...   187   1e-47
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687     34   0.14 
05_02_0037 + 5883285-5884292                                           31   1.3  
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478     31   1.3  

>03_05_0228 -
           22137771-22138016,22138109-22138306,22138852-22139018,
           22139129-22139132
          Length = 204

 Score =  189 bits (460), Expect = 3e-48
 Identities = 93/181 (51%), Positives = 112/181 (61%), Gaps = 1/181 (0%)
 Frame = +3

Query: 93  MGAYXYIXXLYXKKLSDVMRFLLXVRVWQYRQLTXMHRAPRPTRPDKAXXLXYRAKQXYX 272
           MGAY Y+  L+ +K SDVMRF+  VR W+YRQ   + R  RPTRPDKA  L Y+AKQ Y 
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60

Query: 273 XXXXXXXXXXXKXPVAKGATYGKPKSHGVNQLKPTRNLQSIAEERVGXXCGGLXVLSSYW 452
                      K PV KG  YGKPK  G+ QLK  RN +S+AEER G   GGL VL+SYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120

Query: 453 VAQXSSYXYFXVILXDPSHKAIXXXPXINXIVNAVHXHXEMXGLTSXGRXSRGL-GKAHX 629
           V + S+Y YF +IL D +H AI   P IN +   VH H E+ GLTS G+  RGL GK H 
Sbjct: 121 VNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHT 180

Query: 630 Y 632
           +
Sbjct: 181 H 181


>05_03_0257 +
           11145558-11145876,11148181-11148347,11149114-11149311,
           11149405-11149650
          Length = 309

 Score =  187 bits (455), Expect = 1e-47
 Identities = 92/180 (51%), Positives = 111/180 (61%), Gaps = 1/180 (0%)
 Frame = +3

Query: 96  GAYXYIXXLYXKKLSDVMRFLLXVRVWQYRQLTXMHRAPRPTRPDKAXXLXYRAKQXYXX 275
           GAY Y+  L+ +K SDVMRF+  VR W+YRQ   + R  RPTRPDKA  L Y+AKQ Y  
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166

Query: 276 XXXXXXXXXXKXPVAKGATYGKPKSHGVNQLKPTRNLQSIAEERVGXXCGGLXVLSSYWV 455
                     K PV KG  YGKPK  G+ QLK  RN +S+AEER G   GGL VL+SYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226

Query: 456 AQXSSYXYFXVILXDPSHKAIXXXPXINXIVNAVHXHXEMXGLTSXGRXSRGL-GKAHXY 632
            + S+Y YF +IL D +H AI   P IN +   VH H E+ GLTS G+  RGL GK H +
Sbjct: 227 NEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTH 286


>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
          Length = 353

 Score = 34.3 bits (75), Expect = 0.14
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +3

Query: 306 KXPVAKGATYGKPKSHGVNQLKPTRN 383
           K PV KG  Y KPK  G+ QLK  RN
Sbjct: 267 KRPVHKGIVYSKPKHQGITQLKFQRN 292


>05_02_0037 + 5883285-5884292
          Length = 335

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 176 AVPSVDSYAPRSQAHKAGQSPXTXLPC*TXL--CCIQNPCATWWPQASSC*GC 328
           AV   ++ AP ++  +A +SP         L  CC  +P + WWP+     GC
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFRCCWPSPPSVWWPRCGCGGGC 323


>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
          Length = 772

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -1

Query: 404 FLSNGLKVAXGLQLVDTMALGLAISGTLSNWXLAATTSHTDSE 276
           +++ G +V  G++ V  +ALGL ++GT   W L   T  +D++
Sbjct: 587 YVALGSEVPLGVEKVHELALGLELAGTRFLWALRKPTGVSDAD 629


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,925,129
Number of Sequences: 37544
Number of extensions: 311037
Number of successful extensions: 428
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)