Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_C23
         (920 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   205   4e-53

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  205 bits (500), Expect = 4e-53
 Identities = 94/184 (51%), Positives = 119/184 (64%)
 Frame = +3

Query: 93  MGAYXYIXXLYXKKLSDVMRFLLXVRVWQYRQLTXMHRAPRPTRPDKAXXLXYRAKQXYX 272
           MGAY Y+  ++ KK SD +R+LL +R W YRQL+ +HR PRPTRP+KA  L YRAKQ + 
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60

Query: 273 XXXXXXXXXXXKXPVAKGATYGKPKSHGVNQLKPTRNLQSIAEERVGXXCGGLXVLSSYW 452
                      K PV KG TYGKPK+HGVN+LK  ++ Q++AE R G   G L VL+SYW
Sbjct: 61  VYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYW 120

Query: 453 VAQXSSYXYFXVILXDPSHKAIXXXPXINXIVNAVHXHXEMXGLTSXGRXSRGLGKAHXY 632
           VA+ S+Y ++ V+L DP HKAI   P    I   VH H E  GLTS GR SRGLGK   +
Sbjct: 121 VAEDSTYKFYEVVLIDPFHKAIRRNPDTQWITKPVHKHREQRGLTSAGRKSRGLGKGWRF 180

Query: 633 SSNK 644
           S+ +
Sbjct: 181 SATR 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,893,907
Number of Sequences: 27780
Number of extensions: 238811
Number of successful extensions: 321
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)