Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_C22
         (966 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    34   0.034
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.11 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.32 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.32 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.74 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.9  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   6.9  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   9.1  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 33.9 bits (74), Expect = 0.034
 Identities = 20/70 (28%), Positives = 28/70 (40%)
 Frame = +2

Query: 686 PXXSPPLARRPXXGPTHLXSPXLXXAPAPPPPSXXAXTXPAXXXXXPXPPPXXRXPPPXX 865
           P  +PP+  +    P+ L  P    AP   PPS      P+     P  PP    PP   
Sbjct: 154 PASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPS-----APSLPSAVPPMPPKVPPPPLSQ 208

Query: 866 HPLFSXTXRP 895
            P+ + + RP
Sbjct: 209 APVANTSSRP 218


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +2

Query: 752 LXXAPAPPPPSXXAXTXPAXXXXXPXPPPXXRXPPPXXHP 871
           L  +P PPPP+    T        P P P    PPP   P
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
 Frame = +2

Query: 686 PXXSPPLARRPXXGPTHLX----SPXLXXAPAPPPPSXXAXTXPAXXXXXPXPPP 838
           P   PP    P   P  +     +P +   P PPPP   A   P      P PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP----PPPPP 782



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
 Frame = +3

Query: 666 PPPLPXX--PXPPPPSPXXPXXVPP 734
           PPP P    P PPPP P      PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 16/59 (27%), Positives = 18/59 (30%)
 Frame = +2

Query: 704 LARRPXXGPTHLXSPXLXXAPAPPPPSXXAXTXPAXXXXXPXPPPXXRXPPPXXHPLFS 880
           L + P   P  +  P    AP P PP       P      P        PPP   P  S
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVS 786


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 21/63 (33%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
 Frame = +2

Query: 686 PXXSPPLARRPXXGPTHLXSPXLXXAPAPPPP-SXXAXTXPAXXXXXPXPPPXXRXPPPX 862
           P   PP  R     P    S      P PPPP S  A + P        PPP    PPP 
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP----PPPR 367

Query: 863 XHP 871
             P
Sbjct: 368 SAP 370



 Score = 29.9 bits (64), Expect = 0.56
 Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
 Frame = +2

Query: 686 PXXSPPLARRPXXGPTHLXSPXLXXAPAPP-PPSXX-AXTXPAXXXXXPXPPPXXRXPPP 859
           P   PP A  P   P+   S  +    APP PPS   A   PA     P  PP    PPP
Sbjct: 420 PPSLPPSAP-PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478

Query: 860 XXHP 871
              P
Sbjct: 479 APAP 482


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 18/57 (31%), Positives = 21/57 (36%)
 Frame = +2

Query: 686  PXXSPPLARRPXXGPTHLXSPXLXXAPAPPPPSXXAXTXPAXXXXXPXPPPXXRXPP 856
            P  +PP+ +     P     P    AP  P PS  A   PA     P P P    PP
Sbjct: 1117 PSGAPPVPKPSVAAPP---VPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170



 Score = 29.5 bits (63), Expect = 0.74
 Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
 Frame = +2

Query: 686  PXXSPPLARRPXXGPTHLXSPXLXXAPAP--PPPSXXAXTXPAXXXXXPXPPPXXRXPP 856
            P   P +A  P   P+    P    + AP  P PS  A   P      P P P    PP
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151



 Score = 29.1 bits (62), Expect = 0.98
 Identities = 16/58 (27%), Positives = 19/58 (32%)
 Frame = +2

Query: 686  PXXSPPLARRPXXGPTHLXSPXLXXAPAPPPPSXXAXTXPAXXXXXPXPPPXXRXPPP 859
            P  + P    P  G   +  P     P PPP        P+     P PPP    P P
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP-PVPPPSTAPPVP 1220



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
 Frame = +2

Query: 686  PXXSPPLARRPXXGPTHLXSPXLXXAPAP-PPPSXXAXTXPAXXXXXPXPPPXXRXPPP 859
            P  +PP+       P    S     AP P P PS    + PA     P P P    P P
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVP 1095



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
 Frame = +2

Query: 686  PXXSPPLARRPXXGPTH---LXSPXLXXAPAPPPPSXXAXTXPAXXXXXPXPPPXXRXPP 856
            P   P +A  P   P+    +  P +   P P P S             P PPP    P 
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPV 1200

Query: 857  P 859
            P
Sbjct: 1201 P 1201



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 18/62 (29%), Positives = 21/62 (33%)
 Frame = +2

Query: 686  PXXSPPLARRPXXGPTHLXSPXLXXAPAPPPPSXXAXTXPAXXXXXPXPPPXXRXPPPXX 865
            P  +PP+ +     P     P    AP  P PS  A   PA     P  P      PP  
Sbjct: 1136 PSGAPPVPKPSVAAPP---VPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP 1192

Query: 866  HP 871
             P
Sbjct: 1193 PP 1194


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 17/62 (27%), Positives = 22/62 (35%)
 Frame = +2

Query: 686  PXXSPPLARRPXXGPTHLXSPXLXXAPAPPPPSXXAXTXPAXXXXXPXPPPXXRXPPPXX 865
            P  +PP+ R     P  + +P     P   PP   A   PA     P PP      P   
Sbjct: 1686 PVSTPPV-RPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744

Query: 866  HP 871
            +P
Sbjct: 1745 NP 1746



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = +3

Query: 666  PPPLPXXPXPP-PPSPXXPXXVPP 734
            PPP+   P P  PP P  P   PP
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPP 1732



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = +2

Query: 773  PPPSXXAXTXPAXXXXXPXPPPXXRXPPPXXHPL 874
            PP    +   P      P PPP    PPP   P+
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPM 1723



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 14/47 (29%), Positives = 15/47 (31%)
 Frame = +1

Query: 745  PXPXXRPRPPPPFXXXXNPPXXXXXXAXPPPXXXXTPXGAXPPFQPN 885
            P     P PPPP      PP      A PP         +  P  PN
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPN 1745



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 666  PPPLPXXPXPPPPSPXXPXXVP 731
            PPP P    PPP +P  P   P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPP 1728


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = -2

Query: 869 GXAPXGVXXXXGGGXAXSXXXXGGLXXXXKGGGGRGRXXGXGXXGGW 729
           G  P G     GG         GGL     G GG G   G     GW
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPGW 273


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 152 ADRAESQHQREDEAQNTYEIHF--TEIL*CPENSQI 51
           AD   S+ Q E   +N YE+H+  + +L C +N ++
Sbjct: 231 ADAIASKEQVESGTKNVYELHWSMSRLLACIKNGEV 266


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 16/63 (25%), Positives = 17/63 (26%)
 Frame = +1

Query: 733 PPXLPXPXXRPRPPPPFXXXXNPPXXXXXXAXPPPXXXXTPXGAXPPFQPNXSALLIXPT 912
           PP +P P     P  P      PP      A PP      P     P  P        P 
Sbjct: 500 PPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPG 559

Query: 913 XXG 921
             G
Sbjct: 560 APG 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,646
Number of Sequences: 5004
Number of extensions: 30591
Number of successful extensions: 258
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)