Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_C22
         (966 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 669 PPLPXXPXPPPPSPXXP 719
           PP P  P PPPPS   P
Sbjct: 338 PPKPAPP-PPPPSSSGP 353


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 182 EEFPPGLRSSADRAESQHQREDEAQNT 102
           +EFP    S  +R  S HQR   + NT
Sbjct: 102 KEFPNSSSSDDERPNSIHQRASFSLNT 128


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 672  PLPXXPXPPPPSP 710
            P+   P PPPP P
Sbjct: 1852 PVSGSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,868
Number of Sequences: 438
Number of extensions: 4480
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31806957
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)