Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_C20
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   193   3e-50
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    27   4.5  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    26   6.0  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    26   6.0  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    26   6.0  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    26   6.0  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  193 bits (470), Expect = 3e-50
 Identities = 86/130 (66%), Positives = 106/130 (81%)
 Frame = +2

Query: 383 FYPLDFTFVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLAWINTPRKEGGLGKINI 562
           FYPLDFTFVCPTEI+AFSE   +F + N +V+  S DS ++HLA+INTPRKEGGLG INI
Sbjct: 39  FYPLDFTFVCPTEIVAFSEAASKFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINI 98

Query: 563 PLLSDLTHSIAKDYGVYLEDLGHTLRGLFIIDDKGILRQITMNDLPVXRSVDETLRLVQA 742
           PLL+D +H +++DYGV +ED G   RGLF+ID KG+LRQIT+NDLPV RSVDE LRL+ A
Sbjct: 99  PLLADPSHKVSRDYGVLIEDAGVAFRGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDA 158

Query: 743 FQYTDNHGEV 772
           FQ+ + HGEV
Sbjct: 159 FQFVEEHGEV 168



 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 21/41 (51%), Positives = 30/41 (73%)
 Frame = +1

Query: 280 ISKPAPEWEATAVVNGEFTQLSLSSFKGKYLVIFLLSPGFY 402
           I KPAP+++ TAVVNG F ++ L+ +KGK+  +FL   GFY
Sbjct: 5   IGKPAPDFKGTAVVNGAFEEIKLADYKGKW--VFL---GFY 40


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 24/100 (24%), Positives = 40/100 (40%)
 Frame = +2

Query: 392 LDFTFVCPTEILAFSERIEEFRKINTEVVACSVDSHFTHLAWINTPRKEGGLGKINIPLL 571
           LD        ILA       +R+ + ++   S+D+    + W +TP        + +   
Sbjct: 634 LDVIMEANEVILAIQSSALAYRRESQKIYKLSIDTFGEEVPWTSTPET-----LVLLCRQ 688

Query: 572 SDLTHSIAKDYGVYLEDLGHTLRGLFIIDDKGILRQITMN 691
            +LT S          D+ +T    F I DKG+LR +  N
Sbjct: 689 FELTRSALVQSHQGTSDVENT----FKIKDKGVLRNVVSN 724


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 194 IRVTRLEVVMFFRVEREKSIINYNLQKL 277
           IRV R EVV+  RV++EK  I+ + +++
Sbjct: 63  IRVGRNEVVVVLRVDKEKGYIDLSKRRV 90


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 333 HSTFVIKFQRKVPCYFSSIPWILHSY 410
           HS+F +  Q+K+P Y S+   IL  Y
Sbjct: 204 HSSFQMALQKKMPLYLSTKNTILKKY 229


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 536 EGGLGKINIPLLSDLTHSIAKDYGVYLEDLGHTLRGLF 649
           + G+G I   ++  L HS  KD  V+ E L  T   LF
Sbjct: 274 QSGIGNIANAIIGGLAHSPFKDLEVWTEVLQDTFLPLF 311


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 148 VLLSVMTCSSSLFDGDSCYSFGSGNVFPGGARK-IDHKLQFTKAM 279
           V+  V+T   +L D D+ Y+  SGN++ GG  K I   L + K++
Sbjct: 23  VIYQVLTDRFAL-DEDNFYAKASGNLYLGGTWKGITRNLDYIKSL 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,334,963
Number of Sequences: 5004
Number of extensions: 68987
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)