Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_C14
(866 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 32 0.092
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 30 0.37
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 29 1.1
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 2.6
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 27 3.5
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 27 3.5
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 26 6.0
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 8.0
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 32.3 bits (70), Expect = 0.092
Identities = 21/86 (24%), Positives = 46/86 (53%)
Frame = -3
Query: 684 GPLGLKSFDAVDPVGHVVMVRGCSNCQRQILITLSVHNLEVDLVVLPQRNELPADFWTRL 505
GP GL + D ++ GH V++ ++ + L+ + N+++D V+ +R +L D +
Sbjct: 1764 GPAGLAAADQLNRAGHHVVIYERAD-RPGGLLQYGIPNMKLDKKVVERRIQLMIDEGIEV 1822
Query: 504 VLAIAVGKSAIVAVLIVQRQSETVAL 427
+ + VGK+ V++ + + + V L
Sbjct: 1823 LTNVEVGKNGDVSLDELHKVYDAVVL 1848
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 30.3 bits (65), Expect = 0.37
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +3
Query: 225 EKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSK--DIVRECFPV*VQTYI 398
+K I + +KS + ++ K+++ NK+N +E A Q W + K DI E Y+
Sbjct: 132 KKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKEQDIQDELRIANKDGYV 191
Query: 399 RRKQH*ADVQA 431
R++ A +A
Sbjct: 192 ERQEFLAKTRA 202
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 626 TITTWPTGSTASKDLRPNGPWQPAKYDNDVLFFMYNXEYN 745
T + P +SKD+RP PW P + D +L + +N
Sbjct: 692 TFSVRPPYPPSSKDIRPEAPWLPEE-DELLLLLLRRYSFN 730
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/65 (21%), Positives = 35/65 (53%)
Frame = +3
Query: 150 PQSPTPNSKTIFTTASSXADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAY 329
P+ N ++ +T S + ++ + ++ ++++ +T+ NKL+ ++ + +YAY
Sbjct: 3 PKKRMKNGSSLKST-SKKGEKSRNIITIQDLFSKREAQ-LTDTPNKLLTDHDQSASDYAY 60
Query: 330 QLWLQ 344
L LQ
Sbjct: 61 ALKLQ 65
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +1
Query: 535 VPLWENNKVYFKI-VNTQRNQYLTLAVRTTPNHNHMAYGVNSVEGFKAQWTLAAR*VRQR 711
+P W N ++ + + RN Y + R N + ++ + F+ W LA+
Sbjct: 964 IPFWLNEQLLKDVFLELSRNHYAEIDDRNPENVSLYHIALHKINVFRDLWRLASWHKESA 1023
Query: 712 RFVLHVQSRIQRXRW 756
R V + + + +W
Sbjct: 1024 RTVKLLSNDFSKKKW 1038
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 3.5
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Frame = +1
Query: 196 PRLPITTIPLKRANRSTRTRRAKSS-------QMS*TNSYETTR*TAWSTPTSYGSKA 348
P LP+T PL+ AN S + + Q+S T S T TA S P Y S A
Sbjct: 269 PLLPVTKTPLEEANSSPAAQNQHITTVDHVHPQVSMTPSLSTNN-TATSVPAPYSSAA 325
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/62 (24%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +3
Query: 189 TASSXADYDHSVEKSKQIYEDKKSEVITNVVN--KLIRNNKMNCMEYAYQLWLQGSKDIV 362
TA + YD +++ KQ+ E+ + + N+++ K ++++ N E + WL+ ++ V
Sbjct: 272 TADTNEHYDRAMQYLKQLVENILNRSLDNLIDTLKQVQHDAENDEE--LKDWLESTRQFV 329
Query: 363 RE 368
R+
Sbjct: 330 RK 331
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +3
Query: 351 KDIVRECFPV*VQTYIRRKQH*A-DVQARRSRF 446
+DI+ E + V ++TY RRK+H +++ R RF
Sbjct: 1045 EDILTEFYEVRLRTYQRRKEHMVNELEKRFDRF 1077
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,805
Number of Sequences: 5004
Number of extensions: 57712
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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