Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_C14
         (866 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    29   5.7  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    29   5.7  

>Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical protein
            H05G16.1 protein.
          Length = 1111

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 129  RLCMPTKPQSPTPNSKTIFTTASSXADYDHSVEKSKQIYED 251
            R  +P  P SPT    T F +  +   +D  V +S+ ++ED
Sbjct: 950  RFDLPPSPCSPTAGGSTPFISILNDDLFDECVSESRSLHED 990


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/51 (27%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +3

Query: 144 TKPQSPTPNSKTIFTTASSXADYDHSVEKSKQIYEDKKSEVITN--VVNKL 290
           T+ +  T N  TI ++ +   + ++ +E++    ED+K +V+TN  ++NK+
Sbjct: 216 TERRDHTLNMLTIRSSTNERYNMEYELEENSDPIEDEKEKVVTNRDMINKV 266


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/51 (27%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +3

Query: 144 TKPQSPTPNSKTIFTTASSXADYDHSVEKSKQIYEDKKSEVITN--VVNKL 290
           T+ +  T N  TI ++ +   + ++ +E++    ED+K +V+TN  ++NK+
Sbjct: 216 TERRDHTLNMLTIRSSTNERYNMEYELEENSDPIEDEKEKVVTNRDMINKV 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,928,925
Number of Sequences: 27780
Number of extensions: 330368
Number of successful extensions: 1102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)