Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_C14
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.6  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   4.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   4.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   8.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 700 VRQRRFVLHVQSRIQRXRWCSLXQPTPGVTAWRSDT 807
           + Q +++L     +Q     S  QP  G+  W+SDT
Sbjct: 192 ITQSQYLLQQGLGLQGHNPSSGLQPGEGLPMWKSDT 227


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +2

Query: 206 RLRPFR*KEQTDLRGQEERSHHKCRKQTHTKQQ--DELHGVRLPAMAPRLQRYR 361
           R    R +++   R   ERS  + R + + K +  D+LH V    +  R  R R
Sbjct: 233 RYEDSRHEDRNSYRNDGERSCSRDRSREYKKDRRYDQLHNVEEKHLRERTSRRR 286


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +1

Query: 391 LIFAENNIKLMYKRDGLALTLDDENSNDGRLAYGDGKDKTSPKVS 525
           L   E  IK+ ++     +    EN + G    GDG  + SP+ S
Sbjct: 307 LCLTERQIKIWFQNR--RMKWKKENKSKGTPGSGDGDTEISPQTS 349


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 369 TPGRYLWSLGAIAGRRTP 316
           TPG + +S+ A+A   TP
Sbjct: 304 TPGSFNFSMAALATEHTP 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,037
Number of Sequences: 438
Number of extensions: 4017
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)