Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_C12
         (944 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    28   1.7  
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    27   2.9  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    26   8.9  

>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -2

Query: 685 SXYSQASLGHSSAASQSTXRGSN*ANRRQKNENGLVPLE*VHTLSS*LXRHRKPNNC 515
           S +S    G+SS +S  T   SN      KN  GL+ L+ + T++S      KP NC
Sbjct: 322 SKHSSPVKGNSSISS--TWTPSNLKIYHSKNSMGLMDLDALKTVASNSKYRTKPKNC 376


>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +1

Query: 466 WPDCPTLNEVRDQGSCGSCWAFGAVXAMTTEYVP-ILTELNHFH 594
           WPD   L  V D  S   CW   A   MTT   P ++ ++   H
Sbjct: 52  WPDKQRLERVLDVKSDEDCWVV-ATAYMTTALKPNVMNDVTQLH 94


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +1

Query: 379 DEHFATLPIKTHKIDLIASL--PENFDPRDXWPDCPTLNEVRDQGSCGSCWAFGA 537
           +E     P+ ++  D I +L  P++ D    WP    L  V   GS   C  FG+
Sbjct: 37  EESLKKYPVISNPQDFIVTLDGPDDPDLAVNWPLAKKLRNVAVMGSACLCAGFGS 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,449,354
Number of Sequences: 5004
Number of extensions: 67054
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)