Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_C11
         (1006 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       30   3.3  
07_01_0516 - 3850252-3852870                                           29   4.4  
03_01_0515 - 3864796-3865425                                           29   5.8  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +2

Query: 929  PPPRXLXXXAPPPXXXPFPPCPXXPG 1006
            PPP       PPP   P PP P  PG
Sbjct: 346  PPPPAKGPPPPPPPKGPSPPPPPPPG 371


>07_01_0516 - 3850252-3852870
          Length = 872

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +2

Query: 929  PPPRXLXXXAPPPXXXPFPPCPXXP 1003
            PPPR L    PPP   P PP P  P
Sbjct: 10   PPPRLLPPQ-PPPTSRPLPPPPPPP 33


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 929  PPPRXLXXXAPPPXXXPFPPCPXXP 1003
            PPP  L    PPP   P PP P  P
Sbjct: 83   PPPPPLPPPPPPPAASPPPPPPSPP 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,863,694
Number of Sequences: 37544
Number of extensions: 206906
Number of successful extensions: 986
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2952114480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)