Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_C09
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    26   6.3  
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    26   8.4  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    26   8.4  

>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/52 (32%), Positives = 20/52 (38%)
 Frame = +3

Query: 258 GKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGGDSTSYG 413
           GK  G   + D  +          F   RG     +Y TRV G GG  T YG
Sbjct: 166 GKFIGVGSDGDSRISTSSKSRFPSFGSSRG-----SYRTRVYGDGGGFTDYG 212


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +1

Query: 223 TTLSLGTGKWGEGRSSGLWERATKDFLVKVVITGSSSMMIAAN*PDRLTAPEY*DLE 393
           T + +G G +G   +  L +  + D ++ +      S M AAN  +++  PEY DL+
Sbjct: 4   TIVIVGCGVFGLSTAVELAKNHSFDNIIAIDAEPVPSSMSAANDINKIVRPEYADLK 60


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 21  YREFLKILTFLSRAAKPVTIQNVFQGCCYPAAFLVCVNAQ 140
           +  +LK LT  S A     +     GCC  AAF+ C  AQ
Sbjct: 434 HEAYLKQLTSSSNADL-CNVSRAGGGCCTAAAFIKCFLAQ 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,096
Number of Sequences: 5004
Number of extensions: 60462
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)