Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_C07
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    32   0.094
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    27   3.5  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    27   4.7  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    27   4.7  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   4.7  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   8.1  

>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 32.3 bits (70), Expect = 0.094
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +2

Query: 689 YIWLNWLPLGNPEHAYQYTFGCWSVAFSCVLELAL--QLSSVXHI-LFISE 832
           Y W  WL L   E  + Y + C++  FS  L LAL  Q + +  I LF+ E
Sbjct: 454 YTWWGWLYLDLKERRWLYVYACFAHYFSFALVLALVQQFAKIQTILLFVIE 504


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
 Frame = +3

Query: 150 ELENDERIATIITDLITLSNEVDSVAFGPSEN------------FKKISITFDDHWYIIC 293
           ++++ ERI  ++ D IT S   DS+   P EN              K  I +  +WY + 
Sbjct: 102 DIDSSERIR-LVYDKITGSKTEDSLGICPGENPYADIISIFPLHQPKFDIKWSKYWYQLL 160

Query: 294 LSNKK 308
           L NKK
Sbjct: 161 LGNKK 165


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -1

Query: 624 LHPKPSVLPKQALLNGSRLRNNIVLSKRSSLTFIMPNIS*PTFLITHALIINVIHLNNI 448
           L P PS+    AL        N +L+K +  T  +P    P F I H  + N I+L  I
Sbjct: 336 LQPCPSLAEWDALRKVWLFITNKLLNKDNMYTAWIPLRHPPIFYIGHVPVFNDIYLTKI 394


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 744 PLVAGVLPFHVFWNLLCNLALXLTFCLLVKVVWYILFWRHF 866
           P ++ +LP  +F   L NL +   F  + + + Y+LF  H+
Sbjct: 198 PRLSSILPDEIFTKRLPNLRIFSNFIKVCRPLIYMLFMWHW 238


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 23/73 (31%), Positives = 32/73 (43%)
 Frame = -1

Query: 792 RASSRTHEKATLQQPKVY*YACSGLPKGNQFNQIYTNTMDNSELMGTDSQI*LIR*LHPK 613
           R SSR    +    P +  Y  S  P   + N+ Y+   +++    T  Q   I   HP 
Sbjct: 151 RNSSRPFTSSFHSAPFLSSYGSSNDPSQERVNE-YSLPSNSNSTYTTPLQS--INNEHPL 207

Query: 612 PSVLPKQALLNGS 574
           P+VL   ALLN S
Sbjct: 208 PTVLENNALLNNS 220


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 798 LALXLTFCLLVKVVWYILFWRHFVLSS 878
           L++ LTF   +K  WYI  +R+ +L S
Sbjct: 331 LSIGLTFSHGIKTDWYISVFRYLILFS 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,447,588
Number of Sequences: 5004
Number of extensions: 70845
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)