Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_C06
(993 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 34 0.027
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.083
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual 29 1.3
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 28 2.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 9.5
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 34.3 bits (75), Expect = 0.027
Identities = 22/60 (36%), Positives = 24/60 (40%)
Frame = +3
Query: 729 GGRGXXRGGAXXXGGXRXGXVXXGARVGAXGRXXXGGRAXGXRRRGXXPGXAAARRXGXR 908
GGRG GG GG R G G R GA G GGR RG G + G +
Sbjct: 16 GGRGGFNGGRGGFGGGR-GGARGGGRGGARG--GRGGRGGARGGRGGSSGGRGGAKGGAK 72
Score = 33.5 bits (73), Expect = 0.047
Identities = 29/73 (39%), Positives = 31/73 (42%)
Frame = +3
Query: 729 GGRGXXRGGAXXXGGXRXGXVXXGARVGAXGRXXXGGRAXGXRRRGXXPGXAAARRXGXR 908
GGRG RGG G R G G R GA G GGR G R G G R G
Sbjct: 9 GGRGGSRGGRGGFNGGRGG--FGGGRGGARG----GGR--GGARGGR--GGRGGARGGRG 58
Query: 909 XXAXGRXRAEGXA 947
+ GR A+G A
Sbjct: 59 GSSGGRGGAKGGA 71
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 32.7 bits (71), Expect = 0.083
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = +2
Query: 404 PPXTXRRGXPXTHSXFSPXTPXXXXPPXXXXPPXPXXXXTIPXGPXPPSS 553
PP + P S +P P PP PP P + P P P SS
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASS 1739
Score = 26.6 bits (56), Expect = 5.4
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = -3
Query: 865 PRRRXPXARPPXXXRPXAPTRAPXXTXPHRXPPXXXAPPRXXPRP 731
P R A PP P P P PP PP P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 180
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +3
Query: 12 YHSL*GILKILIIQTYHSRNQTRDKYNFRLFSLNFIQFFVVYEXYYRLHKY 164
YH+L IL+ +TY R KY SL F+ Y +YR+ KY
Sbjct: 12 YHNLL-ILEASFRKTYLQLQVRRQKYMAFYVSLLVWNFYFGYRVFYRISKY 61
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.9 bits (59), Expect = 2.3
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +3
Query: 729 GGRGXXRGGAXXXGGXRXGXVXXGARVGAXGRXXXGGRAXGXR 857
GGRG RGG GG G G+R G G GG G R
Sbjct: 145 GGRGGSRGG---FGGNSRGGFGGGSR-GGFGGGSRGGSRGGFR 183
Score = 27.5 bits (58), Expect = 3.1
Identities = 18/50 (36%), Positives = 19/50 (38%)
Frame = +3
Query: 729 GGRGXXRGGAXXXGGXRXGXVXXGARVGAXGRXXXGGRAXGXRRRGXXPG 878
GGRG RGG G G G G R GG + G R G G
Sbjct: 138 GGRGGFRGGRGGSRGGFGGNSRGG--FGGGSRGGFGGGSRGGSRGGFRGG 185
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 3.1
Identities = 25/99 (25%), Positives = 26/99 (26%)
Frame = +3
Query: 381 PXQXXXGPPPXXLXGGXXPPTXXFPXXHPXXPFPXXPXRPLXQXXXXQFPXXPXPXXLXX 560
P G PP PP P P P P P+ P P P
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPA-PSGAPPVPKPSVAAPPVPAPSSG-IPPVPKPAA--- 1186
Query: 561 XXXXXXXXXXXSXXPXXTTXXXPXPPSPPPRXXPPXPXP 677
S P PP PPP PP P P
Sbjct: 1187 ---GVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 27.1 bits (57), Expect = 4.1
Identities = 25/99 (25%), Positives = 26/99 (26%)
Frame = +3
Query: 381 PXQXXXGPPPXXLXGGXXPPTXXFPXXHPXXPFPXXPXRPLXQXXXXQFPXXPXPXXLXX 560
P G PP PP P P P P P+ P P P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPV-PSGAPPVPKPSVAAPPVPAPSGA--PPVPKPSVAAP 1169
Query: 561 XXXXXXXXXXXSXXPXXTTXXXPXPPSPPPRXXPPXPXP 677
S P PP PPP PP P P
Sbjct: 1170 PVPAPS-----SGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = -3
Query: 838 PPXXXRPXAPTRAPXXTXPHRXPPXXXAPPRXXPRPP 728
PP P P AP P P P P PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 9.5
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +3
Query: 627 PXPPSPPPRXXPPXPXP 677
P PP PPP PP P
Sbjct: 9 PPPPPPPPGFEPPSQPP 25
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,933,133
Number of Sequences: 5004
Number of extensions: 22926
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 513276802
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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