Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_C05
         (918 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein...    32   0.50 
U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein...    32   0.50 
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    31   1.5  
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    30   2.7  
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U61288-1|AAB17543.1|  790|Caenorhabditis elegans CE protein.           29   3.5  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    29   6.2  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    29   6.2  
Z69386-1|CAA93430.1|  241|Caenorhabditis elegans Hypothetical pr...    29   6.2  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    29   6.2  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    29   6.2  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      29   6.2  
L25598-5|AAM15550.1|  113|Caenorhabditis elegans Calpain family ...    28   8.1  
L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family ...    28   8.1  
L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family ...    28   8.1  
L25598-2|AAV58887.1|  780|Caenorhabditis elegans Calpain family ...    28   8.1  

>U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein
           1.0, isoform b protein.
          Length = 154

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 25/84 (29%), Positives = 41/84 (48%)
 Frame = +1

Query: 178 KQKKILSFFQDVSQLNTDDEYYKIGKXYDIXMNMDNYTNKKXVEEFLKMYRTGFMPXNLX 357
           K KK+ S F +    +T D YY + + + + +    +TN   V+E +K Y     P +  
Sbjct: 51  KPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKK 99

Query: 358 FSVFYDKMRDEAIALFHLFYYXKD 429
           +S       +EAIA FH +Y  K+
Sbjct: 100 WSTL-----EEAIAYFHKYYEGKE 118


>U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein
           1.0, isoform a protein.
          Length = 155

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 25/84 (29%), Positives = 41/84 (48%)
 Frame = +1

Query: 178 KQKKILSFFQDVSQLNTDDEYYKIGKXYDIXMNMDNYTNKKXVEEFLKMYRTGFMPXNLX 357
           K KK+ S F +    +T D YY + + + + +    +TN   V+E +K Y     P +  
Sbjct: 51  KPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKK 99

Query: 358 FSVFYDKMRDEAIALFHLFYYXKD 429
           +S       +EAIA FH +Y  K+
Sbjct: 100 WSTL-----EEAIAYFHKYYEGKE 118


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = -3

Query: 913 GXGXGGNXXGGSGGXGXXRGFRGXVFXXCAAGXVNGSG 800
           G G GGN  GG GG G   G RG        G   G G
Sbjct: 83  GNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGG 120


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = -3

Query: 913 GXGXGGNXXGGSGGXGXXRGFRGXVFXXCAAGXVNGSG 800
           G G GG   GG GG G   G  G     C  G   G G
Sbjct: 142 GGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCG 179



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = -3

Query: 913 GXGXGGNXXGGSGGXGXXRGFRGXVFXXCAAGXVNGSG 800
           G G GG   GG GG G   G  G     C  G   G G
Sbjct: 71  GCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGG 108


>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
           protein R08B4.1b protein.
          Length = 1160

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 907 GXGGNXXGGSGGXGXXR-GFRGXVFXXCAAGXVNGSGS 797
           G GGN  GG+GG G    G  G       AG  NG+G+
Sbjct: 822 GGGGNGGGGNGGGGNGNGGGAGDGNGGAGAGNGNGAGA 859


>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical
           protein R08B4.1a protein.
          Length = 1137

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 907 GXGGNXXGGSGGXGXXR-GFRGXVFXXCAAGXVNGSGS 797
           G GGN  GG+GG G    G  G       AG  NG+G+
Sbjct: 799 GGGGNGGGGNGGGGNGNGGGAGDGNGGAGAGNGNGAGA 836


>U61288-1|AAB17543.1|  790|Caenorhabditis elegans CE protein.
          Length = 790

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 907 GXGGNXXGGSGGXGXXR-GFRGXVFXXCAAGXVNGSGS 797
           G GGN  GG+GG G    G  G       AG  NG+G+
Sbjct: 452 GGGGNGGGGNGGGGNGNGGGAGDGNGGAGAGNGNGAGA 489


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 145  KSKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 240
            +SK+VDA    KQK ++   Q V  LN  +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 145  KSKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 240
            +SK+VDA    KQK ++   Q V  LN  +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308


>Z69386-1|CAA93430.1|  241|Caenorhabditis elegans Hypothetical
           protein ZK596.1 protein.
          Length = 241

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -3

Query: 907 GXGGNXXGGSGGXGXXRGFRG 845
           G GGN  G  GG G  RG RG
Sbjct: 220 GFGGNQGGNQGGFGGNRGGRG 240


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = -3

Query: 913 GXGXGGNXXGGSGGXGXXRGFRGXVFXXCAAGXVNGSG 800
           G G GG   GG GG G   G  G      + G   G G
Sbjct: 123 GCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGG 160


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = -3

Query: 913 GXGXGGNXXGGSGGXGXXRGFRGXVFXXCAAGXVNGSG 800
           G G GG   GG GG G   G  G      + G   G G
Sbjct: 123 GCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGG 160


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 145  KSKNVDAVFVEKQKKILSFFQDVSQLNTDDEY 240
            +SK+VDA    KQK ++   Q V  LN  +EY
Sbjct: 2277 RSKSVDAPKTSKQKTVIRRSQSVCDLNDVNEY 2308


>L25598-5|AAM15550.1|  113|Caenorhabditis elegans Calpain family
           protein 1, isoform c protein.
          Length = 113

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 913 GXGXGGNXXGGSGGXGXXRGFRGXVF 836
           G G GG   GG G  G   GF G +F
Sbjct: 53  GGGGGGGGGGGGGFGGGNGGFGGGIF 78


>L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family
           protein 1, isoform b protein.
          Length = 737

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = -3

Query: 913 GXGXGGNXXGGSGGXGXXRGFRGXVFXXCAAGXVNGSG 800
           G G G    GG GG G   G  G +      G  NG G
Sbjct: 111 GGGGGQRQGGGGGGFGDILGGIGSLIGGGGGGQYNGGG 148


>L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family
           protein 1, isoform d protein.
          Length = 759

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = -3

Query: 913 GXGXGGNXXGGSGGXGXXRGFRGXVFXXCAAGXVNGSG 800
           G G G    GG GG G   G  G +      G  NG G
Sbjct: 136 GGGGGQRQGGGGGGFGDILGGIGSLIGGGGGGQYNGGG 173


>L25598-2|AAV58887.1|  780|Caenorhabditis elegans Calpain family
           protein 1, isoform a protein.
          Length = 780

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/38 (36%), Positives = 15/38 (39%)
 Frame = -3

Query: 913 GXGXGGNXXGGSGGXGXXRGFRGXVFXXCAAGXVNGSG 800
           G G G    GG GG G   G  G +      G  NG G
Sbjct: 157 GGGGGQRQGGGGGGFGDILGGIGSLIGGGGGGQYNGGG 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,159,313
Number of Sequences: 27780
Number of extensions: 280395
Number of successful extensions: 929
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)