Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_C04
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...   136   3e-33
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    27   2.7  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   4.7  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    26   8.3  

>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score =  136 bits (330), Expect = 3e-33
 Identities = 63/129 (48%), Positives = 84/129 (65%)
 Frame = +3

Query: 357 PATSATLTSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVGMRAAMR 536
           P+T   +T  + L LYE++  +RR+E A   LYK K IRGFCHL  GQEAVA G+  A+ 
Sbjct: 67  PSTEIEVTKGELLGLYEKMVTIRRLELACDALYKAKKIRGFCHLSIGQEAVAAGIEGAIT 126

Query: 537 DADSVITAYRCHGWTYLMGVSVLGVLSELTGRRTGCSRGKGGSMHLYXXXXXXXXXXXXA 716
             DS+IT+YRCHG+ Y  G+S+  ++ EL GR+ G S+GKGGSMH++            A
Sbjct: 127 LDDSIITSYRCHGFAYTRGLSIRSIIGELMGRQCGASKGKGGSMHIFAKNFYGGNGIVGA 186

Query: 717 QVPLGAGSG 743
           Q+PLGAG G
Sbjct: 187 QIPLGAGIG 195



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 739 VAFAHKYRADGGVPFALYXDGAANXGXLFEXYXCLTM-GLALRXRCXXXGYG 891
           + FA KY       FALY DGA+N G  FE +    + GL +   C    YG
Sbjct: 194 IGFAQKYLEKPTTTFALYGDGASNQGQAFEAFNMAKLWGLPVIFACENNKYG 245


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 475 PRMIFSLYRFPDAVSILRNIV 413
           PR++F +   PDAV IL+N++
Sbjct: 332 PRIVFHIQITPDAVEILKNVL 352


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 27/98 (27%), Positives = 42/98 (42%)
 Frame = -1

Query: 667 MEPPLPREQPVLRPVSSESTPSTLTPMR*VHP*QRYAVITESASRIAALIPTATASCPEY 488
           +E P+   +PV  P  +E TP TL+P+      +    + E +   A       AS   Y
Sbjct: 41  LEDPVNPIRPVYTPTRTEITPVTLSPIPITPVREFQPYLHEISQEYARYSKQKRASLRRY 100

Query: 487 R*QKPRMIFSLYRFPDAVSILRNIVSCSYSLRASSEVS 374
             +  ++  S+       S+LR   S S  LR +SE S
Sbjct: 101 LEKHGKLEGSMKESSINGSLLRR-SSVSTILRPASESS 137


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 283 RKIQHEKRGDIRNQALQTP*IGSGALQHQPHSLLKMLLSC 402
           R  Q   + DI  + L    +GS  + ++ HSLL  LL+C
Sbjct: 311 RSCQPWVQHDIYGKLLSQRKMGSDVISYEFHSLLGQLLTC 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,188,548
Number of Sequences: 5004
Number of extensions: 62129
Number of successful extensions: 193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)