Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_B22
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    27   3.7  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    27   4.9  
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    26   8.5  

>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 310 LASSISVFRTFKSTSPLRQFPKVRNAASTCRDFVFSI 200
           L  S  VFR F+S++P   FP V  A    R F  S+
Sbjct: 9   LQLSWQVFRRFQSSNPQLSFPCVDQAQERSRQFEQSL 45


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/67 (23%), Positives = 28/67 (41%)
 Frame = -1

Query: 255 SFQRYAMLLQLAGTLSSALFLVHCEVTTAVI*XKVISQHTGSENRYQDSLPHHCXQGNLF 76
           + +R  +L+ LA      + +     T  V+   +  ++T     YQ   P+H  +   F
Sbjct: 114 AIERKVLLVGLAAEQKPFVDIYPINFTLHVLFDPINGENTSYSPLYQIDEPYHSDEPYAF 173

Query: 75  DFERLDT 55
            F R DT
Sbjct: 174 SFSRSDT 180


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 657 DLLYXEIPXRVFHTDHPPNMAESLIKFMRQD 749
           D    ++P ++FHT H P+  E+LI    QD
Sbjct: 162 DFFSLQLP-KIFHTFHNPSSDEALINSRVQD 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,239,769
Number of Sequences: 5004
Number of extensions: 59411
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)