Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_B13
         (960 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.56 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.2  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    27   3.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.1  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
 Frame = +2

Query: 332 PGGGXPXXXPPP--RPPXXPXPPXPRXY 409
           P G  P   PPP   PP  P PP P  Y
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGY 32



 Score = 29.9 bits (64), Expect = 0.56
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +3

Query: 603 PPGXPX-PXPTPXXPPPXRPXPP 668
           PPG P  P P P   PP +P PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 594 GXXPPGXPXPXPTPXXPPPXRPXPP 668
           G  PP  P P      PPP  P PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 341 GXPXXXPPPRPPXXPXPPXPRXYTXL 418
           G P   PPP P   P PP P   + L
Sbjct: 800 GNPFKAPPPAPLPPPAPPLPTAMSSL 825


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -1

Query: 408 YXRGXGGXGXXGGRGGGXXXGXPPPG 331
           + RG  G G  GG GGG   G PPPG
Sbjct: 181 HHRGHNGGGF-GGFGGG--SGGPPPG 203


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = +3

Query: 582  PXXXGXXPPGXPXPXPTPXXPPPXRPXPPXRXP 680
            P      PP  P   P P   PP    PP   P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,070,217
Number of Sequences: 5004
Number of extensions: 9931
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)